Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03318 ATGGCTAGGCAATTGTGTGAAGACAAATCCAAGGACATGGCTTCATCAACTGGGTTGTTCTACTCAGATGTGTCATCAAACAGCCCAACTCTCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAACCTTCATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTCTTCGGCAAATCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGAGTCTTCTTGCAATTTTTATAACCAGCATGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCTGAAACAAGTAGCGAAAATTTAATAGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGTTAATGCTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGTAACGAAAGGCCCAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAACCCTTCAAGTATTGGGTTGCAATCTTTTGAGCTAAGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGGTATTTTGGAAAATCAATCAGTGCTCAACAGCAACAACAAATGTTGCAAGACGGGTATATGAGTCCTAACAAAGCTGCAAATATTTATCAGGGGCATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTCGGAACAAAGGAAAATGATGTGCAAAAGCAGAAGCACTCTCAAAAGAACAAGTGGGAAGAGGGTAACAGCGGTGGTGGTTCCTCAAAGAACCATTCTCTTAGCTCTCTAGAGTTCGTGGAACTGCAGAAGAGAAAGACAAGGCTGCTCTCGATGCTGGAAGAGGTTGATAGAAGATACCAACATTACTGTAACCAAATGAAGGCTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGGGCAGCCACAGTTTACTCGGCTTTGGCTTTGAGAGCCATGTCTAGACATTTTAGGTGTCTGAAAGATGGAATCATGGAACAAATTCAAGCCACTAGAAAAGCTATGGGAGAGAAGGATCCCGTTGCACCAGGCACAACAAGGGGCGAAACACCAAGGCTTAAAATAATTGACCAATCACTGAGACAACAAAGGGCCTTTCAACAAATTAGCATGATGGAAACCCATCCCTGGAGACCCCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCATCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACTGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCCAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAACAACAAAACGACGTAGCATCGTCGGAGGGAGGAGGCACCAATCCCGGGGATCAAAACGCGCCACGCGAGGATCAGAAGCCAACGCAGGCTCGGCTCCTCCGAATTGACTCGGAGAGCGTGTCGTCCATGGTCACCAACACGGACCACAAAAACGACACGAAAAGCGGCAAAGGCCTCCAAAACGACAACCAATTGAATGACAACAGCCATCCCGCGGACGCGTTCGGGTCGGTGGAGCTTGACTTCTCGTCATACGCGCAGCACTCCTCCGGCGTGGTTGGTTACGATGGTGACAGCGGCAATGAGAGGTTCCAGGGTGGCGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGTGTGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACGCACGGGACCAGATAGAAGAGTGTCAAACAGTTCAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGAAGAAGACGTGGAAAAATATCAAAGATAATTTGGAGGGGTTGTGGTCCCTTGTTCACTTCATGGAAGACGTACAAACTTCTGGTGCCAATGAGAATTGGTTGCTTTATGATATATCTGTTTTATGA 2103 0.4765 MARQLCEDKSKDMASSTGLFYSDVSSNSPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLHPHSESNGVMWKSFFGKSSQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSREGYFGKSISAQQQQQMLQDGYMSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKENDVQKQKHSQKNKWEEGNSGGGSSKNHSLSSLEFVELQKRKTRLLSMLEEVDRRYQHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQATRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGTNPGDQNAPREDQKPTQARLLRIDSESVSSMVTNTDHKNDTKSGKGLQNDNQLNDNSHPADAFGSVELDFSSYAQHSSGVVGYDGDSGNERFQGGGGGVSLTLGLQQQGESVVSLAFPPATQSSMFYARDQIEECQTVQYSLLDGEGQNMPYRNLMGTQLLHDLKKTWKNIKDNLEGLWSLVHFMEDVQTSGANENWLLYDISVL 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03318 700 MobiDBLite consensus disorder prediction 540 554 - -
Phco4g03318 700 Pfam Associated with HOX 235 358 IPR006563 -
Phco4g03318 700 SMART HOX_1 411 475 IPR001356 GO:0003677
Phco4g03318 700 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
Phco4g03318 700 Gene3D - 414 476 - -
Phco4g03318 700 CDD homeodomain 411 472 IPR001356 GO:0003677
Phco4g03318 700 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 500 - -
Phco4g03318 700 SMART prehox3 229 360 IPR006563 -
Phco4g03318 700 MobiDBLite consensus disorder prediction 479 557 - -
Phco4g03318 700 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
Phco4g03318 700 FunFam BEL1-like homeodomain protein 4 414 476 - -
Phco4g03318 700 MobiDBLite consensus disorder prediction 488 508 - -
Phco4g03318 700 MobiDBLite consensus disorder prediction 515 532 - -
Phco4g03318 700 MobiDBLite consensus disorder prediction 259 285 - -
Phco4g03318 700 SUPERFAMILY Homeodomain-like 412 477 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03318 Phco-Chr4 53706239 53710039 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco4g03318 POX 4e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00295 4 1880868 1887889 Phco4g03318 4 53706239 53710039 PCT