Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03317 ATGGCAGCGACAACTACAACAACTTTCCTCAAACTTCAAAACCAGCCCACCAAGCCCAAACGACGCAAATATCGAGAAACTACAATCTCCGCTGCGGCTTCTCCAAACCACACCCAAACACCCCCTCCCCCTCACCGTCCAACACCTCAATCCCCTCAACCACCTGCATTGCCCGAATCTCCCTCCACCCACAGGATCCGCTTCTCCCCGGGCCGCTTCTCCCCGATAATGGACTTCCCCCACTCCTCCCCCACCGCCAATGGCCACCACCCGTCCCAGGCCCAGGCCCAGCCCCAGCCCCACGACTTCCCTTCCAGCTTCTCCAAGTTTAACTCCGCCCTTACCGCGGGCCTTTTGAACCCAATGTCCCCCCCGCCCGACAAGACCCGATCCAGCCCAACGCTCTTCGAAATGATGGCCAGTGAGCCCGATGTCCACCACAGGCCCACCACCCACATCCCTTCAACTGCCGTCAGCGCCGCCGCCGCTGCGTCCTCGCTCCACAAACCCCAAATTCTCGATCGCCACGCCCTCATGATGCAGCGGATTTCGGACCTGTTAGGGTCCCGGAGCCCCGGGAACCAGTTCAACGATGGCGTTTCCAGTGACATTAAGCTCACGCTCAGCTCCAAAGACGGAATCAGTGTCTCCATGAACGTGCATCGCCAAATCCTCGTCGCGCATAGTAGGTTCTTCTCGGTGAAGCTCTCCGATCGCTGGACCAAGCAGCAGCAGCAGCGCTCGCCGGTTCCCTACGAAGTTGAAATCGCCGATTGCGACGATGTGGAGGTTTACATTGAGACCTTGAGGTTGATGTATTGCAAGGATCTTAGGAAGAAGCTCATGAGGGAGGATGTCTCCAGAGTTCTCGGTATCTTAAAGGTTTCAGCCGCCATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACTTGGAAGCGGCGCCTTGGGCCGAGGATGAGGAAGAGAAGGTGGCGTCGCTCCTTTCTGAGCTTCGTCTTGAAGCGGTTGGCGCAGGGGAGGTTTTGAAGAGGGTTTCAACCGATGCTGCTGCCAATGGAAATGAAGAGGGGAGTGATAATGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTTGAAGGCAAGGATGAGAAGGCCAGGCGTGAGATGAAAGGGTTAGTGTCGAAGATGCTGCATGAAAATTCTTCTCAGAATGATCTTCGAAAGGAGTCGTTGTACTTAGCATGTGATGATTGTCTGCAGTTACTTCGTCACCATTTTCTGCAGGCTGCGGGTTCGGACTTGCAGGATGTGAGTCAAATTGCAAGACAAGCAGATAATTTGCATTGGATTTTGGATATTTTAGTTGACAGACAAATTGCTGAAGATTTCCTGAAGACATGGGCCTCTCAAGCAGATTTAGCCGAAGCTCATTCTAAAGTGCCAGCAGTTCACAGGTTTGAGATTAGCAGAGTTACAGCGAGGTTGTTTGTTGGGATTGGGAAAGGACAGTTGTTGGCTTCTAAAGATGTTCGGTGTTTGCTTCTAAAAACATGGCTGGTGCCCTTTTATGATGACTTTGGTTGGATGAGGAGGGCATCCAAGGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAACACGATTCTTACTCTGCCACTCTCCTGGCAACAGGATATTTTGCTTGCTTGGTTTGATCGTTTCTTGAATTCCGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGCGGAATGGAGAGCAAGAACGGACAAGACAATTACGAATTACAACTACATCAGTTGAGAACCCTTGA 1827 0.5178 MAATTTTTFLKLQNQPTKPKRRKYRETTISAAASPNHTQTPPPPHRPTPQSPQPPALPESPSTHRIRFSPGRFSPIMDFPHSSPTANGHHPSQAQAQPQPHDFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDVHHRPTTHIPSTAVSAAAAASSLHKPQILDRHALMMQRISDLLGSRSPGNQFNDGVSSDIKLTLSSKDGISVSMNVHRQILVAHSRFFSVKLSDRWTKQQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAVGAGEVLKRVSTDAAANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYLACDDCLQLLRHHFLQAAGSDLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQADLAEAHSKVPAVHRFEISRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03317 608 MobiDBLite consensus disorder prediction 1 15 - -
Phco4g03317 608 SUPERFAMILY POZ domain 192 312 IPR011333 -
Phco4g03317 608 ProSiteProfiles BTB domain profile. 202 281 IPR000210 GO:0005515
Phco4g03317 608 MobiDBLite consensus disorder prediction 1 109 - -
Phco4g03317 608 Gene3D Potassium Channel Kv1.1; Chain A 184 315 IPR011333 -
Phco4g03317 608 MobiDBLite consensus disorder prediction 85 109 - -
Phco4g03317 608 Pfam BTB/POZ domain 195 290 IPR000210 GO:0005515
Phco4g03317 608 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 185 594 IPR038920 -
Phco4g03317 608 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03317 Phco-Chr4 53686656 53688934 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco4g03317 BTB 0.00015 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03317 4 53686656 53688934 Phco4g03317 4 53686656 53688934 ECH
Phco4g03317 4 53686656 53688934 Phco7g01715 7 17218362 17220454 PCT