Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03311 ATGGAACAATGGTCAACATTCTCAAATGGGCCTTCTTTAGACTCCCTTGGAGTTGAGACAGTTGGTGAATTTCCTGGAAATGGTTGTTGTCTTGGAGAAGACCATGTTGATAATGGTGCTCAGCATGGTAAACTGACGCAAAAATGCCTGTTCTATCAACTTTTCCCTCTTTATCTGAAGGATAATTGTTCCCAAGCTGGTCCTCGGCCTTTGCTGGTTTTGGTCGATGGACAACAGCTCGATTTGTATAAACTGTTCTCCCTTGTGAAGGATAGGGGTGGATATGCTGAGGTTTCGAAAAATAGATTGTGGGGTTCTGTGACCAAGGAATTGGGTTTGAACCTTGAAGTTTACTCACCAGTGAAATTAGTGTACGCCAAGTATCTGAATGATTTTGAAAGGTGGCTCAAGAAAATTTTTGAAGAGAAGATTTTAAAAAATGGGAATCATGGGTGTGATTGGGGTTTGAAGTGGTTGCCATTGGATATAGAGAAAGAGTTCAGAGGCCTGTTATGTCTAAATCCAAAGAACAAAGCTGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAAGACTGATTTGGCTAACCACAAGAATGGTAATAATCTATTGGACACCAAAGATCAAAATAATAAATCTGAGGATGTCCAACACATTGAAGGTGACAATAATGAAAAATCCTGTAATGGAATTAAGGACAATCCTGCAACCTTGGGTGCAGAATGTGCTGACAAGGAATATAGCCCTCGCAAACGCAAACGGAAACGGGATGCATTCTCTGGCATGATAAGCTGGATGAAGGATATTGCAAAACATCCTCTTGTTCCTTTAACTCAACCGATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCCGGGACTTTTTTGGTCAATTTCTGAAGGCAAGACATATTCTGTCACTGAGAACGCATGAAGAACCAAACAGTGGATTGTCTTCTTTGCAGAAGCAGAAGATGCATCCTGCCATGTACGAGGATCATGTTGCTCTTGGTCGCCATGCTACAGGAAAATCAAGATGCAATGAGAGGCTGCCTTTCTCTGTTAAATCTTGGTCATGCTCTATCTGCAATCCATGTTCTCACAATGGAAATACATTGGCAGGTTCACATAATAAGGGGGCAGAAAAATGTCCTCATGAGAAAACATCTGAAACTGTAGATGTATTGACTGAAAAAGCAATGGCTGAATCATCTGGGGACGAGTTTCTTGAAAAGCAAGTATCTGTAGGCCCTCGTTTTCAAGCTGAAATCCCTGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGCTGGGCACACGAGTATGGTCTTTGAAACATGGCACAGAACCTGAAACAGATATTGGAAGGGGAAGACAAGAGAAGTGTAGCTGCGAACATCAAGGTTCTGTAGCGTGTGTTAGATTACATATCGCTGAAAATAGGGTGAAATTGAAGCTTGAATTGGGTTCTGAATTTTACCATTGGGGATTTGATGGAATGGGTGAGGAAGTTTCACTTCAATGGACAACTAAAGAAGAAAAGAGATTTAAGGATATCATGAGGTCAAATGTTCCCTCTAAAATTAAATACTTTTGGAACAATGGATTCAAATACTTTGCAAACAAGACAAGAAGACACTTGGTGAGCTATTACTTCAATGTGTTCCTCATTCAACTAAGAACCTATCAGAATCGAGCGACCCCAAAGAATATTGATAGCGATGATGAAGTCGAGTTTGGATATTTGAGCAAAGGATTTGGGATGGAAGCCATCAAGGGTCCTGGTGATGATTTCCTGGAGTGTTCCAAGAGCGAGCAGTGCATTAATTTTGAATAG 1851 0.4046 MEQWSTFSNGPSLDSLGVETVGEFPGNGCCLGEDHVDNGAQHGKLTQKCLFYQLFPLYLKDNCSQAGPRPLLVLVDGQQLDLYKLFSLVKDRGGYAEVSKNRLWGSVTKELGLNLEVYSPVKLVYAKYLNDFERWLKKIFEEKILKNGNHGCDWGLKWLPLDIEKEFRGLLCLNPKNKADDELFKSKSNKKKKKTDLANHKNGNNLLDTKDQNNKSEDVQHIEGDNNEKSCNGIKDNPATLGAECADKEYSPRKRKRKRDAFSGMISWMKDIAKHPLVPLTQPIPKPSKWKEYKGRDFFGQFLKARHILSLRTHEEPNSGLSSLQKQKMHPAMYEDHVALGRHATGKSRCNERLPFSVKSWSCSICNPCSHNGNTLAGSHNKGAEKCPHEKTSETVDVLTEKAMAESSGDEFLEKQVSVGPRFQAEIPEWTGVVSESDSKWLGTRVWSLKHGTEPETDIGRGRQEKCSCEHQGSVACVRLHIAENRVKLKLELGSEFYHWGFDGMGEEVSLQWTTKEEKRFKDIMRSNVPSKIKYFWNNGFKYFANKTRRHLVSYYFNVFLIQLRTYQNRATPKNIDSDDEVEFGYLSKGFGMEAIKGPGDDFLECSKSEQCINFE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03311 616 MobiDBLite consensus disorder prediction 185 229 - -
Phco4g03311 616 MobiDBLite consensus disorder prediction 211 229 - -
Phco4g03311 616 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Phco4g03311 616 ProSiteProfiles ELM2 domain profile. 415 459 IPR000949 -
Phco4g03311 616 SMART ARID_2 42 133 - -
Phco4g03311 616 Pfam ARID/BRIGHT DNA binding domain 59 133 IPR001606 GO:0003677
Phco4g03311 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 42 593 - -
Phco4g03311 616 Gene3D - 32 147 IPR036431 GO:0003677
Phco4g03311 616 CDD ARID 51 133 - -
Phco4g03311 616 SMART bright_3 46 138 IPR001606 GO:0003677
Phco4g03311 616 SUPERFAMILY ARID-like 46 138 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03311 Phco-Chr4 53606724 53611382 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco4g03311 ARID 1.8e-11 CL0123