Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03296 ATGATTCCTCTCTCTCTCTCTCTCTCTCAAGTCAACAACTACTACAGTGCCCTGCTTGAGCCACAGTACTATCTACCAATCTTGTGGCATTCCAACCAAACCCTGATTTTGGAATACTTGTTTGGATTCTTTGAGTTGAATTATCTATTTCATTTCACTTGGTTGTTGTTGTGTCTACCCTGCAAAGCCAGAAAAATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCCGGGGTGTTGAGATGGGGGGAAGGATATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCAGCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGTATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTGGCAAAGGGTGAATCCATTTGGCTGAACAATGCCCATTCGGCTGATTGTAAAGTTTTTAGTCGTTCTCTGCTGGCAAAGAGTGCATCCATTGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGGGTTATTGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTCATTGAGCAGATCAAGACTTCTTTCTTGAATAATTTGCATATCAATGTTCCTAATAAGTCAGGAACTGCATTGAAATCAAGGAACCAGGAAGATCTTGCATATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTATGACATAGCCAACAGAACCTCTCCAGATGGTAGTTCAAATGCATTCCGATCTAATCAACCACTAGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAATTATGGATGATGAGCTGAGTAACTGTGCTCATAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTGCTTCTGCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAGAATGCATTCACAAAAGTTCCATCAGGAATCAAGCTTTGTCTGTTGGAGGACAGAAGGGGCAATGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGTCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGACTAGAGACTGATGAGATTGGCATGAACCACGTCATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGACGACAAAGTTTCAATACTTGATGATGCAATTGAGTACCTTAGAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAACTCAACGAGGGGTAACAAATATAGAGCCCGGGACTAGAAGATTACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTGGCAAAAACCACAATGGCAAGAAATCAGTTGTAAAAAAGAGAAAGGTTTGCGGTGTAGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGCAGTTATGCTAATGATGTTACTGTGAGTACTAGTGACAATGAAATTGTGATTGAAATGAAGTGCCCCTCCAGAGCAGGAAGGCTACTAGAAATTATGGAAGCAGTCAATAGTTTCAATATAGATTTAACTTCAGTTCAGTCAACAGAGGCTAATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTGTTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCTTCGAAGTTCTGA 2076 0.4114 MIPLSLSLSQVNNYYSALLEPQYYLPILWHSNQTLILEYLFGFFELNYLFHFTWLLLCLPCKARKMVPENMKKQLALAVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTTEISPQSKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGESIWLNNAHSADCKVFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDFSLIEQIKTSFLNNLHINVPNKSGTALKSRNQEDLAYVAFDNNVESIPEIGYDIANRTSPDGSSNAFRSNQPLDETFMVERITSGTSQVQSWQIMDDELSNCAHNSMNSSDCISQTFASPENIASAPKCNNPSDPFARDIQKCNNPKMTLVDPRSDDWHYQRVLSDLLKTSDQLLMRMHSQKFHQESSFVCWRTEGAMDCQWPRSGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLRKLERRIKELETQRGVTNIEPGTRRLPQDMVERTSDHYFGKNHNGKKSVVKKRKVCGVDETGKEINSDALKGSYANDVTVSTSDNEIVIEMKCPSRAGRLLEIMEAVNSFNIDLTSVQSTEANGNLYLTIKSVFTGATVATTKRIKQALQKVASKF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03296 691 Pfam Helix-loop-helix DNA-binding domain 493 539 IPR011598 GO:0046983
Phco4g03296 691 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 491 555 IPR036638 GO:0046983
Phco4g03296 691 PANTHER TRANSCRIPTION FACTOR TT8 64 689 - -
Phco4g03296 691 ProSiteProfiles ACT domain profile. 623 691 IPR002912 -
Phco4g03296 691 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 489 538 IPR011598 GO:0046983
Phco4g03296 691 Gene3D - 487 552 IPR036638 GO:0046983
Phco4g03296 691 SMART finulus 495 544 IPR011598 GO:0046983
Phco4g03296 691 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 254 IPR025610 -
Phco4g03296 691 Coils Coil 528 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03296 Phco-Chr4 53484595 53488674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g03296 bHLH-MYC_N 1.1e-50 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03296 4 53484595 53488674 Phco4g03296 4 53484595 53488674 ECH