Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03285 ATGAGAACTAGCAACCGAAGTCCTTTCACTTTCCCTGTCTTTCATAGTTTTGACTGTTTGGAATCCCTGCGCTTGCTGAGTTTTTCTACGCAAATAAATAACTGCTCTGATTTGCTGCTGACAGAAAGGGTTGGGATGGGTTGTGATTTTTCTAAGTACACAACATGCTGCATGGGTACAGAGGAGGATGGTCATCCGGCTCCTGAGGACCAGGTTGATGGTGAAAACGAAGACAATGTTGTTGAGGGCATTGACTTGCCAAGGTTTCATGAATTCACCATTGATCAGCTTAGGAGGGCTACATCCGGATTTGCGGTTGAAAATATAGTTTCCGAGCATGGAGAAAAAGCTCCAAATGTGGTCTATAAAGGGAAACTTGATAATCAGATGCGGATTGCTGTTAAACGGTTCAACAGAAATGCCTGGCCTGATGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTGAGGAGCCAGCGATTGATAAATCTGCTAGGATGTTGCTGCGAAGGTGATGAGAGGTTACTTGTTGCAGAATATATGCCCAATGATACGTTGGCAAAACATTTATTCCATTGGGAAAATCAGCCCATGAGATGGGCAATGCGAATGAGAGTTGCATTATGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTAAATGCGTACAGAGTTCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTCGGTTTGATGAAAAATAGCCGAGATGGAAAAAGTTATAGTACGAATTTGGCGTTTACTCCACCTGAATATCTGAGGACAGGCAGAGTTACTCCGGAGAGTGTAACTTATAGCTTTGGGACACTTTTGCTTGACCTTCTCAGCGGAAAGCATATTCCTCCAAGCCATGCCCTTGACCTAATTAGAGACAAGAACCTTCAGATGCTATCAGACTCTTGCTTAGAAGGGGAGCTTACAAATGATGATGGGACTGAATTAGTGCGTCTAGCCTCACTATGTTTGCAATCTGAACCACGAGAGCGTCCTAATCCTAAGTCACTGGTTGCTGCTCTAATACCTCTACAGAAGGATTCTGAGGTTCCTTCTCGTGTACTGATGGGTATACCAGATGGTACATCTACTTTCCCCCTTACACCTCTAGGAGAAGCTTGTCTACGAATGGATCTGACTGCTCTGCATGAGGTGATGGAGAAAATGGGGTATAAAGACGATGAGGGCGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACGTTGAACTCAAAGAAGAAGGGGGATGCTGCTTTTCGGCTTAAGGATTCTAAAACGGCAATTGATAGCTATACGCTGTTCATTGATGTTGGAACCATGGTTTCTCCAACGGTTTATGCACGTCGTAGTTTATGTTATCTTATGAGCAACATGGCTGATGAAGCACTCAATGATGCAATGCAAGCCCAAGTAATATCCCCCATTTGGTACATTGCGTTTTATTTACAAGCAGTTGCACTTTTAGCAATGGGCAAGGAGAATGATGCCCAAATGGCACTTAAAGAGGGTTCCTCGCTTGAAATTAAAAAGAGCACAAATTAG 1608 0.4409 MRTSNRSPFTFPVFHSFDCLESLRLLSFSTQINNCSDLLLTERVGMGCDFSKYTTCCMGTEEDGHPAPEDQVDGENEDNVVEGIDLPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGKLDNQMRIAVKRFNRNAWPDAQPFLEEARAVGQLRSQRLINLLGCCCEGDERLLVAEYMPNDTLAKHLFHWENQPMRWAMRMRVALCLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQMLSDSCLEGELTNDDGTELVRLASLCLQSEPRERPNPKSLVAALIPLQKDSEVPSRVLMGIPDGTSTFPLTPLGEACLRMDLTALHEVMEKMGYKDDEGAATELSFQMWTNQMQETLNSKKKGDAAFRLKDSKTAIDSYTLFIDVGTMVSPTVYARRSLCYLMSNMADEALNDAMQAQVISPIWYIAFYLQAVALLAMGKENDAQMALKEGSSLEIKKSTN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03285 535 Gene3D Tetratricopeptide repeat domain 428 535 IPR011990 GO:0005515
Phco4g03285 535 FunFam probable serine/threonine-protein kinase At4g35230 79 182 - -
Phco4g03285 535 FunFam probable serine/threonine-protein kinase At4g35230 428 535 - -
Phco4g03285 535 FunFam probable serine/threonine-protein kinase At5g41260 184 375 - -
Phco4g03285 535 ProSiteProfiles Protein kinase domain profile. 107 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03285 535 SUPERFAMILY Protein kinase-like (PK-like) 87 367 IPR011009 -
Phco4g03285 535 Pfam Protein tyrosine and serine/threonine kinase 120 357 IPR001245 GO:0004672|GO:0006468
Phco4g03285 535 Gene3D Phosphorylase Kinase; domain 1 80 182 - -
Phco4g03285 535 SUPERFAMILY TPR-like 434 527 IPR011990 GO:0005515
Phco4g03285 535 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 71 533 IPR045845 GO:0004672|GO:0009742
Phco4g03285 535 Gene3D Transferase(Phosphotransferase) domain 1 184 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03285 Phco-Chr4 53386544 53398374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Phco4g03285 PK_Tyr_Ser-Thr 5.6e-26 CL0016