Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03268 ATGGCATTCAGCGGTACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCACTTCGTCGAAGGTGTATCTGCCGATGGAGTCTCTTATCACAAAAACTGCTTCAGATGCAGTCATTGCAATGGCCTTCTCGCGATAAGCAACTACTCCTCGGGCGATGGACTTTTATACTGCAAGGTGCATTTCGAGCAGCTTTTGAAGGAAACTGGCAGCTACCCCAAGAAAGCCCAGTCCTCGGGAAAGCCACCAAACGAGCTGAATAGGGCACCAAGCAAACTTTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGCTCAAAATGCAAGAAAACTGTCTATCCATTGGAAAAGTTGACAGTGGAAGGCGAGTTTTACCACAAATCATGCTTTAGGTGCGCACATGGAGGGTGTTTCCTGACTCCTTCAACCTATGCTGCCCTTGATGGCTATCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAGAACTGAAATGCTACAAGAACAAGAGGCTGTGCCTGTGGAGAATCAGAAGAGTGAAGCTGATCGCTCAGAGTCAGAGGCAGAGCCTGAGACAGACACAGAGGCAGCAGAGGTGGAAGCAGAGGCAGTGACAGAGACAGAGACAGAGAAAGAGACAAAGGAAGGTGAAGAAGCTGATGAGGAACCTAACACCGAGAAAGAGCAGTAG 735 0.4789 MAFSGTQQKCKACDKTVHFVEGVSADGVSYHKNCFRCSHCNGLLAISNYSSGDGLLYCKVHFEQLLKETGSYPKKAQSSGKPPNELNRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKRTEMLQEQEAVPVENQKSEADRSESEAEPETDTEAAEVEAEAVTETETEKETKEGEEADEEPNTEKEQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03268 244 FunFam LIM domain and actin-binding 1 4 74 - -
Phco4g03268 244 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Phco4g03268 244 Pfam LIM domain 104 159 IPR001781 -
Phco4g03268 244 Pfam LIM domain 10 64 IPR001781 -
Phco4g03268 244 SMART lim_4 9 61 IPR001781 -
Phco4g03268 244 SMART lim_4 103 155 IPR001781 -
Phco4g03268 244 MobiDBLite consensus disorder prediction 183 244 - -
Phco4g03268 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Phco4g03268 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Phco4g03268 244 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Phco4g03268 244 MobiDBLite consensus disorder prediction 201 218 - -
Phco4g03268 244 Gene3D Cysteine Rich Protein 4 74 - -
Phco4g03268 244 Gene3D Cysteine Rich Protein 98 168 - -
Phco4g03268 244 MobiDBLite consensus disorder prediction 228 244 - -
Phco4g03268 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Phco4g03268 244 PANTHER OS06G0237300 PROTEIN 5 86 - -
Phco4g03268 244 FunFam LIM domain and actin-binding 1 98 168 - -
Phco4g03268 244 CDD LIM1_SF3 6 68 - -
Phco4g03268 244 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Phco4g03268 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03268 Phco-Chr4 53276791 53278035 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Phco4g03268 LIM 3e-11 CL0167