Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03248 ATGGACTGGAATCTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTTTAGAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGGCAGGTGGGGAATTCTGGCATAGAATCAGTGTTGACCAAATCCAAAGATGCTGTAGGAGTCTCCAAGATGACATCTTCATCTTCTGGGTCATCTAAGAGAGCTCGTGCCCTTGGCAACGGGACACAAACAGTGTCATGCCTTGTAGATGGGTGCAACTCTGATCTGAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTCTGCGAAGTCCATTCCAAAACTGCACAAGTCACAATTGGGGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTAACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCATCCACTACTGTCATGAATCCTACATGGGGTGGAATTGTTGCTTCTGGTGATGCTAGGCTTCACGGGCACAACCAACAGCACCACAACCAGGGTGAGCTTTTTCTTGGATCTTCTCCAACCGGTTATAAAGAAGGGAAGCAATTGGCCTTCATGCAAGCTGACCACACCCTCAACAACCAAAGCCCACATCTCCCAGGTGGTTCCGTGGGCCAGGCCCAGATGTTTCTGAGGACCGGCCCGTATTCCGAAAGCAGTGGGCTGAGGTGCAAAATGTTGTGCGATAACCTTACAAACTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCCAATGGTGAACCCGCATTCGATGCAGCCATTGGGCCTGAGCCTGCATGATAATAACAGCTTGGAGGCCGTGGATCCGGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGTTCTAATGGATCCCAGGGGAACGAAGCCCCCTCCACTGTTTCCCTTTCAATGGGAATAG 1149 0.4987 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMFRSKGEFSVDLKLGQVGNSGIESVLTKSKDAVGVSKMTSSSSGSSKRARALGNGTQTVSCLVDGCNSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDARLHGHNQQHHNQGELFLGSSPTGYKEGKQLAFMQADHTLNNQSPHLPGGSVGQAQMFLRTGPYSESSGLRCKMLCDNLTNSVHDSSRALSLLSSPQPHSPGNGLSPMVNPHSMQPLGLSLHDNNSLEAVDPVLGLNGSDHSSSMYNIVLMDPRGTKPPPLFPFQWE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03248 382 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
Phco4g03248 382 MobiDBLite consensus disorder prediction 157 179 - -
Phco4g03248 382 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Phco4g03248 382 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Phco4g03248 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 350 IPR044817 GO:0003677
Phco4g03248 382 MobiDBLite consensus disorder prediction 303 325 - -
Phco4g03248 382 FunFam Squamosa promoter-binding-like protein 14 85 155 - -
Phco4g03248 382 Pfam SBP domain 94 167 IPR004333 GO:0003677
Phco4g03248 382 MobiDBLite consensus disorder prediction 303 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03248 Phco-Chr4 53154131 53156580 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco4g03248 SBP 1.3e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03248 4 53154131 53156580 Phco4g03248 4 53154131 53156580 ECH
Phco4g03248 4 53154131 53156580 Phco7g01951 7 32192387 32196172 PCT