Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03220 ATGGGTTGCGCCCTTCGGAAGCCGGCGGATTCTGTCGACTGTCGTCGGCATAAAACCGCCACTGCCGGCGGCGGAAATAATGCCGTTAAGATTCAGGAGAAGCAGGAGACTCTGGCGCCGGAGCGCCGGAGACCTCGACTTGACTCACTCATCACGAGCCACCAAGGGTGGCCGCCGTGGCTGATGGTCGTCGCCGGCGACGCACTTGGAGACTGGACTCCTCGCCGCGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTATAAAGCAAGGGACCTTGTAACTGGGAAAATAGTGGCTTTGAAGAAGGTTAGATTTGACAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGGTTGGTTACTTCAAGAATATCATCCAGTCTTTACTTGGTATTTGAGTACATGGAACACGATCTTGCTGGTCTTGCAGCTGGTGTGGGTTTCAAATTCTCTGAGCCACAGATCAAATGTTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCCAATCTGCTCATTGACAACGAAGGAATACTTAAAATTGCAGATTTTGGATTGGCAACTTTCTATGATCCTAAGCAAAAACATCCTATGACCAGTAGAGTTGTGACCCTTTGGTACCGTCCTCCTGAGCTTCTTCTGGGGGCTACATCATATGGCATTGGTGTCGACCTATGGAGTGCTGGCTGCATTTTGGCAGAGCTGCTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATACAGATTGCCAAATGCTACACTCTTTAAGCCACAGCAACCTTATAAAAGAAACATCTTAGAAACATTCAAGGATCTCCCTTCTTCTTCATTACCTCTGATTGAAACACTTCTTGCAATAGATCCTAATGATCGTGGCACTACCTCCTCTGCTCTAAATAGTGAGTTCTTTACCACTGAGCCCTATACTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCTACCAAAGAATTGGATATAAAACTGAGAGATGAGGAAGCAAGAAGGCAAAAAGCTCTAAGTGGAAAAACCAACGCAGTTGATGGTGCCAAAAGGGTTAGAGTACGCGAGCGTAGTTTGGCCATTCCGGCCCCGGAAGCCAATGCAGAGATCCAAGCAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTCCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCACTGGATGCATCAAATAAAGGAGCTGTTTCATTTGGAGCCACCGAAACTTCCATAGCCTCTACCATATTTGATTCAAAACCTTCTGGATCTGTTATAAGTCATGATCCTGCCATAGACAAAGTGAGGAGAAGTAAAACTGCAGACTCCCAGATGGCTACACCTTGGAAATTTTTGCGTTCATTCAAGCTATCAACAATTGGTCATTCATTTGATTTATTATTTAGAAGCAATTAA 1629 0.4567 MGCALRKPADSVDCRRHKTATAGGGNNAVKIQEKQETLAPERRRPRLDSLITSHQGWPPWLMVVAGDALGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGVGFKFSEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKHPMTSRVVTLWYRPPELLLGATSYGIGVDLWSAGCILAELLAGKPTMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRNILETFKDLPSSSLPLIETLLAIDPNDRGTTSSALNSEFFTTEPYTCEPSSLPKYPPTKELDIKLRDEEARRQKALSGKTNAVDGAKRVRVRERSLAIPAPEANAEIQANLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATETSIASTIFDSKPSGSVISHDPAIDKVRRSKTADSQMATPWKFLRSFKLSTIGHSFDLLFRSN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03220 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Phco4g03220 542 CDD STKc_CDK9_like 80 364 - -
Phco4g03220 542 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Phco4g03220 542 Pfam Protein kinase domain 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03220 542 FunFam probable serine/threonine-protein kinase At1g54610 67 162 - -
Phco4g03220 542 SUPERFAMILY Protein kinase-like (PK-like) 74 369 IPR011009 -
Phco4g03220 542 FunFam probable serine/threonine-protein kinase At1g54610 163 404 - -
Phco4g03220 542 Gene3D Phosphorylase Kinase; domain 1 67 162 - -
Phco4g03220 542 PANTHER CELL DIVISION PROTEIN KINASE 78 368 - -
Phco4g03220 542 Gene3D Transferase(Phosphotransferase) domain 1 163 404 - -
Phco4g03220 542 SMART serkin_6 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03220 542 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03220 Phco-Chr4 52887784 52892189 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco4g03220 Pkinase 1.6e-68 CL0016