Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03217 ATGGCAGCTTTTCCATCCCAATACCACCATCCCTTTCTAGTTCACTCCCCAACCTACTCAATCACTCCTCCCATAAACAAACTCTCTTCTTTGGGGGACCAACAACCCCTTATAAACACCACCACTACCCTTCCTCCTTCTCATTATTTTCACAATACTCTTCATCAGGAAACGTCTCTCAATAGTGTCACTAATCAAGAATCTAGCTGCGCTGATCAAACCTCCAAGGCTACCATCAGTGACACTGACCCTTCTGTGATGAAAAACCATAGTCCTGAGACATCCATGGTTGTGGACAAGCTCGAAAAAGGTGATGAACAGGTCACTCAAAAGGTGACCCCGGTGCACAAGAAGAGAAGAGCAAGAAATGAACCTTCCTTGAGCAGCCCCTTATCAATGGACTCAGCAGAAGGGGCAAAGAAGAAACAAAAGAATAGCAATGGTGGGGATCAAGGAGAAGACAAGCCAAAAGAAGTGAAGAAGGATGAGAAAAAAGGTCCAGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTAGCTGAAAGGGCGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACCCTCATGAAATTAAATAGTGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACCACTAGCAGCTTCCCCACCGCTAATAATGATGACTATCTTTTGGATTATTCATCCCCATCTTTTCTTCAGCCCCACAGGCCAAATGCCTTCTTTGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCGCCGATAACACTGGCTCTTTCAATTAA 1074 0.4507 MAAFPSQYHHPFLVHSPTYSITPPINKLSSLGDQQPLINTTTTLPPSHYFHNTLHQETSLNSVTNQESSCADQTSKATISDTDPSVMKNHSPETSMVVDKLEKGDEQVTQKVTPVHKKRRARNEPSLSSPLSMDSAEGAKKKQKNSNGGDQGEDKPKEVKKDEKKGPEDPPTGYIHVRARRGQATDSHSLAERARREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLMKLNSAASPSLLPCVEQCRPNQAIAFADTTTLTTTTSSFPTANNDDYLLDYSSPSFLQPHRPNAFFEYNGGQIWEVDQRQKFLHPYGFADNTGSFN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03217 357 Gene3D - 180 251 IPR036638 GO:0046983
Phco4g03217 357 MobiDBLite consensus disorder prediction 61 92 - -
Phco4g03217 357 CDD bHLH_AtBPE_like 173 249 - -
Phco4g03217 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Phco4g03217 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 250 IPR036638 GO:0046983
Phco4g03217 357 MobiDBLite consensus disorder prediction 95 124 - -
Phco4g03217 357 FunFam Basic helix-loop-helix transcription factor 180 252 - -
Phco4g03217 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 278 IPR024097 GO:0006355
Phco4g03217 357 SMART finulus 189 239 IPR011598 GO:0046983
Phco4g03217 357 MobiDBLite consensus disorder prediction 137 195 - -
Phco4g03217 357 MobiDBLite consensus disorder prediction 61 195 - -
Phco4g03217 357 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03217 Phco-Chr4 52861206 52863671 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g03217 HLH 1.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03217 4 52861206 52863671 Phco4g03217 4 52861206 52863671 ECH