Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03207 ATGCCCTTTTCCTTCTGCAAACTTCTCTTTCTCACCTCTTATTCCTTTGTTCTCTTCTTCAGTTCTTCTACCCCATCCAAAACACAAGCCAACATTCGTCAAAACAAAGGAAAACAACACCAAATGATGTCTGGTTGGGTGCAAGACACAGAAGAACAAAACTCTGCTTCGTGGTCAAGCCCAAACGCCAACGAACTAAGCTGCTTCTCATTGTGTGCCTACAAACCCATTCCTGAGATCCATGAAGAATGGCACGTGCCCAACAACATCACCCAGAACAACTCACATATTAGAGACATGGCCTTCTCCACCAACTTCGCTGATAACATGTTACTCCAACAACACCAACCATTGCACACTTTCTCTTCTTCCACTAACCTTGACCTATCTCAAGGGCACAACTCCCTCACTCCCAGACCCTCCTTTTACCCGTTGGAGCATGGCTTTCGCGCGGCTTCCGATGTGAGATTTCTTGACCCTCAAGCTTTGAACAAGGTTCATCATGGCGGTGTCTTATTCAGCTCAAATGGCAATAACCAGTTAGCCCTTCCAAATTTAGCAACCATGTGTGCAATGCCTCCCCTACAAGACGGTGATGGATTTTCGGGATTCAAGAATATTGGTGACTCTGATCATGTGGAGGGTTCAAGAAAGGCCTTGCTTCTGAGCACGTCCAACATACTTAGACCCCTTGAATCGTTCCCTCCATCAGGTGCACAACCAACACTTTTTCAAAAGCGAGCAGCACTCAGGAAAAGCTTGGAAGATAACTGCAAAGGCAAGAGTAAAGGGAATAGTGATAGTGGCAAGAGGAAGACGTGTAACAATGGAGAAGGTGTTGAATGGTCGGGGTTGAATTATGATTCTGATGAGAGTGATGAGAATAAGATGATGGAAGAGACTGGAAGGAACGGTGGAAACAGCTCGAATCCGAATAGCACCGTCAATGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGGATACCTGCAAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGATCCGTTGTCCCCAATATTAGCAAAATGGATAGGGCTTCAATACTTGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAGGATCGGTGACCTTCACAATGAATTGGAGTCAACACCACATGCTGGCTCTTCTTTGACTTCAAGCTTTCTTCATCCTTTGACACCCAATTTACCAACACGTATGCAAGAAGAACTTTGTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTGAGGGTTGAGGTTGGGTTGGGTGAAGGAAGAGGTGTAAAGATTCAGATGTGTTGTGAGCGGAAACCTGGTCTCTTGCTGTCCACCATGAGGGCTCTCGACAACCTTGGCATAGACATTCACCAAGCAGTCATCACCTATTGCAATGGCTTTGCTATGGATATTTTCCGAGCTCAGCTACGCAACGAAGGTCAAGATGTCCATCCAGAGCAAATCAAAGCAATTCTATTAGATTCAGCTGGCTTCCATAGCATGACCTAA 1551 0.4597 MPFSFCKLLFLTSYSFVLFFSSSTPSKTQANIRQNKGKQHQMMSGWVQDTEEQNSASWSSPNANELSCFSLCAYKPIPEIHEEWHVPNNITQNNSHIRDMAFSTNFADNMLLQQHQPLHTFSSSTNLDLSQGHNSLTPRPSFYPLEHGFRAASDVRFLDPQALNKVHHGGVLFSSNGNNQLALPNLATMCAMPPLQDGDGFSGFKNIGDSDHVEGSRKALLLSTSNILRPLESFPPSGAQPTLFQKRAALRKSLEDNCKGKSKGNSDSGKRKTCNNGEGVEWSGLNYDSDESDENKMMEETGRNGGNSSNPNSTVNGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAVEYLKELLQRIGDLHNELESTPHAGSSLTSSFLHPLTPNLPTRMQEELCLSSLPSPNGQPVRVEVGLGEGRGVKIQMCCERKPGLLLSTMRALDNLGIDIHQAVITYCNGFAMDIFRAQLRNEGQDVHPEQIKAILLDSAGFHSMT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03207 516 MobiDBLite consensus disorder prediction 301 320 - -
Phco4g03207 516 SUPERFAMILY ACT-like 442 515 IPR045865 -
Phco4g03207 516 MobiDBLite consensus disorder prediction 255 326 - -
Phco4g03207 516 FunFam BHLH transcription factor 323 392 - -
Phco4g03207 516 CDD bHLH_AtAMS_like 331 402 - -
Phco4g03207 516 CDD ACT_UUR-ACR-like 445 505 - -
Phco4g03207 516 Pfam Helix-loop-helix DNA-binding domain 335 377 IPR011598 GO:0046983
Phco4g03207 516 SMART finulus 334 383 IPR011598 GO:0046983
Phco4g03207 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Phco4g03207 516 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 212 513 - -
Phco4g03207 516 Gene3D - 320 393 IPR036638 GO:0046983
Phco4g03207 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 398 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03207 Phco-Chr4 52785447 52788848 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g03207 HLH 1.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03207 4 52785447 52788848 Phco7g01884 7 22049943 22051978 PCT