Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03206 ATGGCGTCGTCGGAGGTATCAATCAAGGGAAATTTGGTGAACGGAAAGGGAGAAAACAGTTCCGGTGGCTTCAACAACGGCAACGATGTTAGGAACGCTGGAGGAGAGCCTCAGAATGGTTCTTCTTCGTCATCCGCCAGAGACGCGGAGACAGCGCTATACCGGGAGCTTTGGCACGCGTGCGCGGGTCCGCTGGTGACGGTACCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATAGAGCAGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACAGACGAAGTGTTTGCTCAAGTGACCTTGCTTCCTGAGCCAAATCAAGACGAAAATGCGGTGGAGAAGGAGGGTCCTCCAGCACCGCCTCCTCGTTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCTTCTGATACGAGTACTCACGGTGGGTTTTCGGTGTTGAGACGACATGCTGATGAATGCCTCCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTGCAAAGCGGGTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCGTCCTCGGTTATCTCGAGCCACAGTATGCATCTTGGTGTTCTCGCAACTGCTTGGCATGCCATATTGACTGGAACCATGTTCACCGTGTATTACAAACCTAGGACTAGTCCAGCCGAATTTATAGTTCCGTATGATCAGTACATGGAGTCTCTAAAAAACAATTACACCATCGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACCGGTACCATTGTTGGAATTGAAGATGCTGATCCCCAAAGGTGGCCTAACTCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACTTCTAACGTACCTCGTCCTGAGAGAGTTTCTCAATGGAAAATAGAGCCAGCCCTCGCTCCTCCTGCTCTTAACCCTTTACCAATGCCCAGGCCTAAGAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCCTCTGTTCTTACCCGTGAAGCATCGTCTAAAGTGAGTGTAGACCCTTTGCCAGCTAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCCGAAAGCAATGAATCTGATACGGCGGAGAAGTCTGTGTGGTCATCTGCTGCAGATGACGAAAAGATTGATGTTGTTTCCACCTCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTACTTTCGGGCTTTGGGGTCCATGGAGATCAATCTTCCCATCCATCATTTGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTTTTTGGACCGCGAAGGCAAACATAATGTTCTTAGTCCATGGCCTAGTCTACCGCTCAATCTCTTGGACTCTAATACAAAAGCCTCTGCTCATGGTGGTGATGCAACTTGTCAAGTTCGAGGCAATTTAAGGTTTAGCAGTGCATTTGGTGACTATACTGTGCTTCATGGGCACAAAGTTGAGCATTCACATGGAAACTTTTTGATGCCTCCTCCACTGTCAAGTCAATATGAGAGTCCTCGTTCTAGAGAATTGTTACCCAAACCAATATCAGGAAAACCTTCTGAGGTGTCAAAACCGAAGGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCTCTGGACCCTTCTGTATCACAAAGGAATGTTGCAATTGAGCCAGTTGGTCACATGCATAACCAACAGCACACGTTTGAAAATGACACGAAGTCTGAGAATTCAAGGGGATTGAAACCGGCTGATGGTCTGCTGATTGACGACCATGAAAAGCCGTCGCAAAATTCTCAGCCACATATGAAAGATGTTCAACCCAAATCTAATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTAGACCTCACAAAATTCAGTGCGTATGATGAGTTAATCGCTGAATTGGATCAGCTATTTGATTTTGGAGGTGAATTAACCTCTCCCCAAAAAGATTGGCTTATTGTCTACACTGACAATGAGGGCGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCTATGTGA 2397 0.4752 MASSEVSIKGNLVNGKGENSSGGFNNGNDVRNAGGEPQNGSSSSSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSVWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGVHGDQSSHPSFVDQNGPVANLSRKHFLDREGKHNVLSPWPSLPLNLLDSNTKASAHGGDATCQVRGNLRFSSAFGDYTVLHGHKVEHSHGNFLMPPPLSSQYESPRSRELLPKPISGKPSEVSKPKDSDCKLFGISLLSSPIALDPSVSQRNVAIEPVGHMHNQQHTFENDTKSENSRGLKPADGLLIDDHEKPSQNSQPHMKDVQPKSNSGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDQLFDFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAM 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03206 798 SUPERFAMILY CAD & PB1 domains 726 797 - -
Phco4g03206 798 Gene3D - 322 392 - -
Phco4g03206 798 Gene3D - 156 261 IPR015300 -
Phco4g03206 798 MobiDBLite consensus disorder prediction 678 727 - -
Phco4g03206 798 FunFam Auxin response factor 322 394 - -
Phco4g03206 798 Gene3D - 721 798 - -
Phco4g03206 798 MobiDBLite consensus disorder prediction 393 432 - -
Phco4g03206 798 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco4g03206 798 MobiDBLite consensus disorder prediction 709 727 - -
Phco4g03206 798 SUPERFAMILY DNA-binding pseudobarrel domain 155 288 IPR015300 -
Phco4g03206 798 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Phco4g03206 798 MobiDBLite consensus disorder prediction 411 426 - -
Phco4g03206 798 CDD B3_DNA 157 259 IPR003340 GO:0003677
Phco4g03206 798 MobiDBLite consensus disorder prediction 606 637 - -
Phco4g03206 798 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 798 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco4g03206 798 MobiDBLite consensus disorder prediction 393 409 - -
Phco4g03206 798 ProSiteProfiles PB1 domain profile. 725 798 IPR000270 GO:0005515
Phco4g03206 798 MobiDBLite consensus disorder prediction 1 48 - -
Phco4g03206 798 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Phco4g03206 798 MobiDBLite consensus disorder prediction 678 708 - -
Phco4g03206 798 SMART B3_2 159 261 IPR003340 GO:0003677
Phco4g03206 798 Pfam AUX/IAA family 771 797 IPR033389 -
Phco4g03206 798 FunFam Auxin response factor 157 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03206 Phco-Chr4 52779945 52783802 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco4g03206 AUX_IAA 2.1e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03206 4 52779945 52783802 Phco7g01885 7 22053509 22058305 PCT