Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03161 ATGCCTCTTTTAAGGAGAAAGCCTTTTTCCTTGGCTGAGCCCCCTGAGGAATTGAAGCCAGACGAGCCTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCGAGATTATCCTGATTATTTGAAGCGATTGAATCTATACCGTCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTATGGTGTCTGAACAGCATGCTACCGAGAAAGTTCAACAGTTTCCCAAGGAGTTAATGACCACTGCTTTAGGGATTATTCAATACAGCATGCTCCCTTTGAAGGATCTAGCTGATTCTATTGGTGAACAGTTACAGAAACGTTTGTTTGTCGGTGCTGAACTACATGGGAAAAAGGATGATGGAGTACATCCATGCAGAATATTAAAAGTAATTCCAAAAGGAGTCAACACATTCTGTTACGAGGTAGCTTGGCTTGACAAAAACAAAAATATAACTCAACAAGCTGAACTCTGCGCAGAAGATTTGGTGCTTAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGGGAGTCTACATACCGGAATGCCCCTTGGGTTTTACATGATGAACTAGCAAAAAATCATGGAATATCAATTGATATACCTGAAGAATTAAGAAGAAGGGTTTTTTACAGAGATGGGCTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACACTGATAACGGTAAAAGGAAGAAGTCTGATGGGGCACAAATTGATGATTCTTGCCAAGAGAAAGGAAATGCTCTACACAAGAATGAAGCTATCAAATACCCCATTGATGATCTATTGGTGAAGCCTGGTCCAGATGATCCTGTTTTTACTGATCGTCCTGCTCCATCAAAAGACTTCAACATTCCAATGAGTTGTGTTGGGGCTCTCTTAATGGTTTGGGATTTGCTTAATTCCTTTGGTAGACTGTTGCACCTGTGGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGTCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGATTTCTCATCAAAGATGATGATGAATACACTTCGGCTGTGAAGAGCCGAAAATTGAAATCTAAGATTACAGTGAATAATTGGACAGAATATTTATGCTATTTCCTAGAGGTGATCAATATTCCTGAACTGCGGCACCATGAAGCAACAATTAAACGGGGACATTATGGCCTTGTAGATGTGAGTGCTAAATTAGAAATCTTAAGCGAATTGGTCAATCAAGCCCTTGAAACCGCAATTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCTCTAGAAGGGAAGAAGCATTGGAAAATGGTAGGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAGGAAGCAATGGATTTGTGGATGGGCTTCTGAATGGTTCAAAAGTCTCAAGGAACAATAATCATGGTATAGAAAATGGAGACATGGTTGAGAAAAGTCTTGTAGGAATAGAACCATCTGAGCAAAACAGTCAATTGGATAGAAGTGAGATCAAGCCTCTAAATCCTGCTTCAAAAAAGACACCTAAGGAGCTAAGTTCAGAGCTGAAAGAACCAACCAAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTTGAAGGCTGATAAGGAGGATCCATCAGAGAAGAATAGTGAAGAGCAGAGGAAAGAATATTTCGAAAGGGAGATGGAGAAACGATTTGTTCGTAGAAGTCCATTAGGTAAAGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGAGATGGGAGAATATTTGTTGAAAGCTGCGATTCCAAGGAATGGGGATACTACAGCAGCAAGGAAGAGATCGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCGAAAGCAACTACAAAAATATTATACTAAAATATGCTCAGAACTCCAGAAAAGGTCGAAGGATTTGATGCACAGGATTACAGATGAATCTGTGCTTCGAAGGTCTACTCGTGTTAGAGCTCCACCTAGGCAGAACCCTGCCAATGCTTTCCTCAGATATGCTAACAAGTGGAAAGAAGAATAG 2136 0.4036 MPLLRRKPFSLAEPPEELKPDEPVYQIRFTKEIFRDYPDYLKRLNLYRQRVWMCKVTGKTGLTYEEAMVSEQHATEKVQQFPKELMTTALGIIQYSMLPLKDLADSIGEQLQKRLFVGAELHGKKDDGVHPCRILKVIPKGVNTFCYEVAWLDKNKNITQQAELCAEDLVLKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISIDIPEELRRRVFYRDGLLICSKKRKNEESLEDTDNGKRKKSDGAQIDDSCQEKGNALHKNEAIKYPIDDLLVKPGPDDPVFTDRPAPSKDFNIPMSCVGALLMVWDLLNSFGRLLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRFLIKDDDEYTSAVKSRKLKSKITVNNWTEYLCYFLEVINIPELRHHEATIKRGHYGLVDVSAKLEILSELVNQALETAIFREKLDEIIEQRQALGASRREEALENGRRRREEKERLKAESGSNGFVDGLLNGSKVSRNNNHGIENGDMVEKSLVGIEPSEQNSQLDRSEIKPLNPASKKTPKELSSELKEPTKNGKELSRKESPKQLKADKEDPSEKNSEEQRKEYFEREMEKRFVRRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEEIDALMSSLNCKGERERALRKQLQKYYTKICSELQKRSKDLMHRITDESVLRRSTRVRAPPRQNPANAFLRYANKWKEE 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03161 711 Pfam DDT domain 304 361 IPR018501 -
Phco4g03161 711 Coils Coil 455 475 - -
Phco4g03161 711 SMART testlast3 303 364 IPR018501 -
Phco4g03161 711 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 593 658 IPR028941 -
Phco4g03161 711 MobiDBLite consensus disorder prediction 538 581 - -
Phco4g03161 711 MobiDBLite consensus disorder prediction 451 501 - -
Phco4g03161 711 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Phco4g03161 711 MobiDBLite consensus disorder prediction 482 501 - -
Phco4g03161 711 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 709 - -
Phco4g03161 711 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Phco4g03161 711 MobiDBLite consensus disorder prediction 451 476 - -
Phco4g03161 711 MobiDBLite consensus disorder prediction 515 581 - -
Phco4g03161 711 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Phco4g03161 711 MobiDBLite consensus disorder prediction 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03161 Phco-Chr4 52367597 52372676 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phco4g03161 WAC_Acf1_DNA_bd 1.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03161 4 52367597 52372676 Phco4g03161 4 52367597 52372676 ECH