Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03151 ATGGTGGTGCACAGTCCCATTGCTCGTTGCCACGTGGGTCCCTTGCACTCAACTCATTTGATTGTGACACTCATCACAGCGACAACAATAAAGTTTCCTTCTTCAACTGCCCCTCTCCTTTCCAGTTCATGCTGTGTGCAGCTACCTAGCAAGCTAAACTACTATGCTTGGGAGCTCACCCCGTTTTTCAAGCTGCTATGCAGTTCTATGTTGGTTTTTATGCTGCTGTGTTGGACTCGACCAGGTGAGTTTTCCTTGGAGATCAAAGAAGTTTATATGTTTCGCCCAAATTTTAGCAGGGGTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTGACAGTCAGTTCAGCTATCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATCTTTTACATTTCCTGAATGATTCCAATAAGCAAATAACGGACTGGGACAGTCATTTAGTTAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGACATGTCATATCACTGGCCCTGGCTTCGGTTGGATTTGTTGGAACACTGTCTCCCTCTATTACCAAGTTGAAATATTTGGTTAGCGTGGAACTGCAGAACAACAATCTTTCAGGACCCTTGCCGGATTACATTTCCTACTTGAAAGACCTACAATATCTAAATCTTGCTGACAATAAATTTAATGGTTCAATACCAGATAAATGGGATGAACTATCCAATCTAAAGTATCTGGATCTTTCATCAAATGGTCTTTCTGGAAGGATCCCAACACAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGATACGCACCTTCAGTGCGGTCCTGGCTTCGAACAGACTTGCACTTCTAAATCTGAAAATCCAGATTCAACCCACAAATCAAAATTTGCAAAAATTGTACGTTATGCAAGTTGTGGTGCCTTTGCACTTCTGTGTCTTGGGGCTATCCTTACATATCGACACCATCAAATGCATAAGCACAAAAAGGAAGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGCAAAATCTCCTTCGGGCAATTGAGAAGATTTTCTTGGCGTGAACTACAACTTGCCACCAAAAATTTCAGTGAAGGCAATATAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCCGATAACACCAAAGTAGCTGTGAAACGCCTCGTTGATTATCACAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAGAAATCTCTTAAGACTAATTGGCTTCTGCACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTTAGTGTAGCTTATCGACTGAGAGATTTAAAACCAGGTGAGAAAGGCTTGGACTGGCCAACAAGAAAACGTGTGGCTTTTGGCACAGCCCATGGTTTGGAGTATCTACATGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGATTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATTACTCATGTCACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACTGGAAAATCTTCAGAGAAGACTGATGTATTTGGATATGGCATAACACTTCTTGAACTAGTCACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTCATCGATTATGTCAAAAAGCTGCTGAGAGAAGAAAGGTTGGAGGACATTGTGGATAGAAATTTGGTGAGTTATGATCCAAAGGAAGTTGAGACCATCCTTCAGGTTGCAATGCTTTGCACCCAAGGCTACCCTGAGGATCGTCCAACCATGTCAGCTGTGGTAAAATTGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGCATGTCGAATCTACACTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 2064 0.4288 MVVHSPIARCHVGPLHSTHLIVTLITATTIKFPSSTAPLLSSSCCVQLPSKLNYYAWELTPFFKLLCSSMLVFMLLCWTRPGEFSLEIKEVYMFRPNFSRGPLKILTRWLIFLTILTVSSAIKDPDVEGEALLDLLHFLNDSNKQITDWDSHLVSPCFSWSHVTCRNGHVISLALASVGFVGTLSPSITKLKYLVSVELQNNNLSGPLPDYISYLKDLQYLNLADNKFNGSIPDKWDELSNLKYLDLSSNGLSGRIPTQLFSVPMFNFSDTHLQCGPGFEQTCTSKSENPDSTHKSKFAKIVRYASCGAFALLCLGAILTYRHHQMHKHKKEVFVDVSGEDESKISFGQLRRFSWRELQLATKNFSEGNIIGQGGFGKVYKGVLSDNTKVAVKRLVDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARITHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREERLEDIVDRNLVSYDPKEVETILQVAMLCTQGYPEDRPTMSAVVKLLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWHVESTLDQEAIQLSRAR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03151 687 Pfam Protein kinase domain 366 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03151 687 ProSiteProfiles Protein kinase domain profile. 365 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03151 687 SUPERFAMILY L domain-like 129 264 - -
Phco4g03151 687 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 126 285 - -
Phco4g03151 687 Gene3D Transferase(Phosphotransferase) domain 1 442 657 - -
Phco4g03151 687 Pfam Leucine rich repeat 194 252 IPR001611 GO:0005515
Phco4g03151 687 Pfam Leucine rich repeat N-terminal domain 127 165 IPR013210 -
Phco4g03151 687 FunFam Somatic embryogenesis receptor-like kinase 1 442 658 - -
Phco4g03151 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Phco4g03151 687 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 110 648 - -
Phco4g03151 687 Gene3D Phosphorylase Kinase; domain 1 334 441 - -
Phco4g03151 687 Gene3D Ribonuclease Inhibitor 125 290 IPR032675 -
Phco4g03151 687 FunFam Somatic embryogenesis receptor kinase 1 334 441 - -
Phco4g03151 687 SUPERFAMILY Protein kinase-like (PK-like) 343 638 IPR011009 -
Phco4g03151 687 SMART serkin_6 365 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03151 687 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03151 Phco-Chr4 52270569 52277500 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco4g03151 Pkinase 1.7e-42 CL0016