LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g03120	ATGGCTAACAACAAGAGCTCCAAGAAACCAATAAGTCTCAATGACAGTCACTATCGCTTCCTCCAAGATCATTCTGCTCCTCCCAAACCCTCTTCCAAACCTTTCGATGAAGAGTCGATCGAATCCTCCGCGCCAAAACAACAACACCAAAACATCCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAGTATCGGACGACAAACAAGAACCGATCAAGGTACATGAAGCACAAAAAGTTGTTGCTCCCTCCTACCATATTTCTACTACTAGGCGCAACTTAGACAAGGAACACGAACCGACCATCTTTCAAGAAGAAGAACAAGAAGAAGAAGATTCACCCAACGTGGTTAGTTCTTCCCCTGGGCAAAACTCGGATGAGAAACACGAACCGATATTTTTTGAAGAAGAAGCTCCACCCGACGTGGTTGATTTTTCCCCTAAGGAAGAAAGGAAGACGAAGGTGAAAGTACAGGGGCGCCGCCGCCTCTGCAAGATTGTGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTTCAAGTTTGATGAACTGATCGACCTTGATTCGCCGATTCCGGTGCCAAGAAACGTCATCCAGATTGAGGAGAGTGGGGGCAAAAATGAAATTAGGGATATTTTGACTGAACTGAACGCCAAGTTTGACTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGAAGGTAAAGGAAGTTATGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCGTCAGGAGAGCTTGTCTGAGGGTATTAAGAATGATGGTGGCGACTGTACTGAGTGTGATTCAGAGGATTCTGTTAAACTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTCTAACTGGTCCCAGATCAACTTATCAGTTGCCTGCTAAAATTGCGAAAATGTTGTTTCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATCTGTAGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGAAGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTGCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCCTACGGGGGAATAATTATTTAGATGATGAGGAAAGTGAAGATGACGCTACTTGGGACTACATGATACTGGATGAGGGGCACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCACTGCAAAATAATCTCAAGGAGTTGTGGGCATTGTTCAATTTTTGTTGCCCAGAGTTGCTTGGTGACAACAAATGGTTTAAAGAAAAGTTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAACAACGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGAACGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTATTCAGTCAAGACGATGAGAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTTTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCGTTTTTGAAGAGTGAGATCGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTTTAAAGAAAATATGTGATCATCCACTTTTGTTGACGAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGCTGATGTTGCAACAAAATTGGCAATGCACATAGCTGATGTTGCTGACACAGATAGGTTTAGAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGTTGGATCATTTGATCCCAGAAGGGCATTGCGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTACTATCCCAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAAGTCAATGATAGACTAAAGATTGTTAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTAGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCTTATCGAATTGGTCAAAAGAAAGATGTCATTGTATATAGACTGATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATACAAGGGAGGATTATTCAAAACGGCGACCGAGCATAAAGAACAGATTCGGTACTTTAGCCAGCAGGATCTTAGGGAACTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGACCGTCAATATACATTTGATGACTCTTTCAAAGCACACATAGAGTTCTTGAATAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGACCGGGCCGCCGGTTCATGCTGAACTTGAGGATGATGAAGTTACAAGGAATTATGGGACTAGATATATTGGGACTTCAAGATCATCATCAAATGACCATATTACTTATGGCTCCGAGTTTGCATTTAATCCTAAGGATGTTTCCACAAGCAAAAAAGGTTCTCCTCCTAGCACTGCTGGTAGTAAATTGACCGAGTCAGATATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTTCTAAATTACCTGACAAGGGTGAGAAACTGCAGAAACGGCTTGAGGAGCTGAGTTTAGAGCTGGCTGAACTTAGAAGTAAAAGAAATGTGATTGATTTGGATGCTTTTACCACTGAATTTCAACAAGGGTTGAATGTATAG	3093	0.4255	MANNKSSKKPISLNDSHYRFLQDHSAPPKPSSKPFDEESIESSAPKQQHQNIPQFSAITDFDSPIGLVSDDKQEPIKVHEAQKVVAPSYHISTTRRNLDKEHEPTIFQEEEQEEEDSPNVVSSSPGQNSDEKHEPIFFEEEAPPDVVDFSPKEERKTKVKVQGRRRLCKIVHEDAGKSVAVDEFKFDELIDLDSPIPVPRNVIQIEESGGKNEIRDILTELNAKFDLLSVERKPRPKRVEGLVEGKGSYDDEGLEYGSAGSSFSPRQESLSEGIKNDGGDCTECDSEDSVKLMDNFVPENDGSITLTGPRSTYQLPAKIAKMLFPHQREGLTWLWSLHCLGKGGILGDDMGLGKTMQICSFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGNNYLDDEESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREQRVGSSVAKELRERIQPYFLRRMKSEVFSQDDEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEADVATKLAMHIADVADTDRFRDEQDVSCKISFIMSLLDHLIPEGHCVLIFSQTRKMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTFDDSFKAHIEFLNSQGIAGVSHHSLLFSKTGPPVHAELEDDEVTRNYGTRYIGTSRSSSNDHITYGSEFAFNPKDVSTSKKGSPPSTAGSKLTESDIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLEELSLELAELRSKRNVIDLDAFTTEFQQGLNV	1030

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g03120	1030	Gene3D	-	583	877	IPR027417	-
	Phco4g03120	1030	MobiDBLite	consensus disorder prediction	1	155	-	-
	Phco4g03120	1030	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	576	857	IPR027417	-
	Phco4g03120	1030	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	335	510	IPR014001	-
	Phco4g03120	1030	Pfam	Helicase conserved C-terminal domain	680	792	IPR001650	-
	Phco4g03120	1030	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	686	842	IPR001650	-
	Phco4g03120	1030	MobiDBLite	consensus disorder prediction	132	155	-	-
	Phco4g03120	1030	FunFam	Protein CHROMATIN REMODELING 24	302	580	-	-
	Phco4g03120	1030	SMART	helicmild6	709	792	IPR001650	-
	Phco4g03120	1030	Gene3D	-	305	582	IPR038718	-
	Phco4g03120	1030	PANTHER	SNF2/RAD54 FAMILY MEMBER	82	1009	-	-
	Phco4g03120	1030	Coils	Coil	991	1018	-	-
	Phco4g03120	1030	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	312	560	IPR027417	-
	Phco4g03120	1030	CDD	SF2_C_SNF	672	803	-	-
	Phco4g03120	1030	MobiDBLite	consensus disorder prediction	258	281	-	-
	Phco4g03120	1030	Pfam	SNF2-related domain	340	630	IPR000330	GO:0005524\|GO:0140658
	Phco4g03120	1030	MobiDBLite	consensus disorder prediction	44	58	-	-
	Phco4g03120	1030	SMART	ultradead3	318	521	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g03120	Phco-Chr4	52056718	52065030	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Phco4g03120		SNF2_N	2.5e-50	CL0023

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g03120	4	52056718	52065030	Phco4g03120	4	52056718	52065030	ECH