Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03115 ATGATGGAAGATGAGAACCATGCCACTTTGCCAAATGCTTTTAACTCCGGAAGCCCCGAAAGCCCTTGCTTAAAGACAACCAACACCAACATCAACAACATCAACATCAACACCAACACCAACACCCCAACCACACACAACAACATCAACAACAATAATCATAACCATAATAACAACAACAATAACCACAACAAAGAACAAGACAGGTTTCTCCCTATTGCCAATGTGGGAAGAATCATGAAAAAGGTCATTCCTTCCAATGGAAAAATCTCTAAGGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTCGTCACTGGAGAAGCCTCTGACAAATGTCAGAGGGAGAAGAGAAAGACCATCAATGGTGATGATGTCATATGGGCCATCACAACCCTAGGGTTTGAGGATTACGTTGAACCCTTGAAAATTTACCTTCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAACAAAGGCTACAACAACACCAACAAAATAATAGTAATAGTAGCCAAGAAGATAATAATCAACAACAATTCAATGCTGCATATGCCTCAACCAATCTCATTTCTCAGCCTCCATATGTGGCCACTGATCAGAAGTTTTCACTACCCTTCTCTCCAAACTCAATTCAGAATCACCACATTGATTCAGTGGGCCACTGCTTAAAGGTTTGTTTTTCTGTTTCTTCTTGGATACAATCACATGTCACAGTTTCAGAGATTCGTTTTCAATCTCTTCGCTCAGGTGAAAGGACTTTAATTATGGGAAATAAAGAGTCAACGCATGATTCTCCTGCTGATTTTCCCCAGCAACCCCCTTCCTCTGATGGAAGTTCAGAAAATACTAGCTATCAATATCATCAAACCCCTTCTTTCGATGGAAGTTCAGCAAATGCTAGCCATCAATATCATCACCCCCCTTCCTATGATGGAAGTTCAGTGAATACTAGCTATCAATATCATCAACCGGTTCAACCTTCTTCATATGCTGGGAGTTCGGTGAATACCAAACAGCAGCATAAGCAGCGACCCACATATATAGCTGACAATTTCAGTTCATTGGATCAGGTTGTTTCCGCTTTGAGAGAAGCTGGTTTGGAGTCTTCAAATCTTATAATTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGCAAATATTCTTTCAACCATAAAAGCCTTCATTATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATTATTGGTCGTACTCTCTCTTCGTTTGATGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATCAAAATGTCTTCAGCTTTTATCCTGATGATCGCTATTGTCATGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTGCCACAATTAAAATTGGCAGGTCCAACATCATTTGCCCCTGTAATCGATGCAGCAGTTGATATTGTGGAAAGAAGCAATGGTCAGTACCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGGTACACCACATGGAAAGTTAAGTCCACAAGAACAAGCAACTATTAATTCTATCATTGCTGCAAGTCACCATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGTCCATGGGATGAAATGCAGCACTTTGATGATAGCATTACTCAGCGCTTTTTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAGAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATGACCCAAAACCTACAATTTGCAAATGAAAAGTCAATTACCTATCAACGTAGAAGGCCTTTTCCTCCGCCTAAGGAAGTAACAGATCGTGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCAGTTGAGCCATCATCTCCAGCTACGGTAGAATCAGCATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACGTGCAAGGAGTGTGGCGTGACATTATCTTCATGCCCTATGTGCCGGCAGCCAATTACAACTCGCCTGAGACTATACACTTGA 2136 0.4082 MMEDENHATLPNAFNSGSPESPCLKTTNTNINNININTNTNTPTTHNNINNNNHNHNNNNNNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQNNSNSSQEDNNQQQFNAAYASTNLISQPPYVATDQKFSLPFSPNSIQNHHIDSVGHCLKVCFSVSSWIQSHVTVSEIRFQSLRSGERTLIMGNKESTHDSPADFPQQPPSSDGSSENTSYQYHQTPSFDGSSANASHQYHHPPSYDGSSVNTSYQYHQPVQPSSYAGSSVNTKQQHKQRPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKYSFNHKSLHYIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDDRYCHGFEEVLARYREIVPQLKLAGPTSFAPVIDAAVDIVERSNGQYHVLVIIADGQVTRNSGTPHGKLSPQEQATINSIIAASHHPLSIILVGVGDGPWDEMQHFDDSITQRFFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRMTQNLQFANEKSITYQRRRPFPPPKEVTDRDNAVLAVPKFESVEPSSPATVESACPICLTNPKDMAFGCGHTTCKECGVTLSSCPMCRQPITTRLRLYT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03115 711 MobiDBLite consensus disorder prediction 170 189 - -
Phco4g03115 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 711 IPR013083 -
Phco4g03115 711 SUPERFAMILY vWA-like 383 566 IPR036465 -
Phco4g03115 711 MobiDBLite consensus disorder prediction 271 357 - -
Phco4g03115 711 FunFam Nuclear transcription factor Y subunit B-3 59 185 - -
Phco4g03115 711 SUPERFAMILY RING/U-box 660 706 - -
Phco4g03115 711 ProSitePatterns NF-YB/HAP3 subunit signature. 101 117 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco4g03115 711 CDD vWA_copine_like 361 611 IPR010734 -
Phco4g03115 711 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 70 134 IPR003958 -
Phco4g03115 711 ProSiteProfiles Zinc finger RING-type profile. 667 700 IPR001841 -
Phco4g03115 711 MobiDBLite consensus disorder prediction 1 65 - -
Phco4g03115 711 Gene3D Histone, subunit A 57 200 IPR009072 GO:0046982
Phco4g03115 711 Pfam Copine 407 618 IPR010734 -
Phco4g03115 711 PRINTS CCAAT-binding transcription factor subunit A signature 136 154 - -
Phco4g03115 711 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Phco4g03115 711 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Phco4g03115 711 PANTHER COPINE FAMILY PROTEIN 1 201 688 - -
Phco4g03115 711 MobiDBLite consensus disorder prediction 9 65 - -
Phco4g03115 711 Pfam Zinc finger, C3HC4 type (RING finger) 664 705 - -
Phco4g03115 711 SMART VWA_4 382 587 IPR002035 -
Phco4g03115 711 SUPERFAMILY Histone-fold 67 189 IPR009072 GO:0046982
Phco4g03115 711 Coils Coil 46 66 - -
Phco4g03115 711 SMART ring_2 667 699 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03115 Phco-Chr4 52015450 52025434 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco4g03115 Copine 2.6e-75 CL0128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03115 4 52015450 52025434 Phco4g03115 4 52015450 52025434 ECH