Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03088 ATGGCTGTAACGAAATTGATACCGGGGTTTCGGTTCAACCCCTCTGGTGTCGAGTTGGTCGTGTACTTTCTGAAGAGGAAAGTGATGGGGAAAAAGTTCTTTGGTGGTGTCATTACGGAACTTGACATATACAAGTATGCTCCGTGGGATCTCCCAGATATGTCTTGTCTAAGAACTGGGGAATTGGAATGGTACTTTTTCTGCCCGCTGGAGAAGAAATATGGCAGTGGGAGTAGGGTGAAACGCTCTACTGAAATTGGGTACTGGAAAGCTACTGGGAACGATAGAGTTGTTCAGCACAATAATCGAACGGTGGGGAAGGTTAGAACACTGATATTTCACCAGGGTAAATCGCCTAAAGGAAATAGAACTGATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTTGCTGACAAAGGAATTGTCCAGGATTCCTACGTTGTCTGCAAAGTATTTCAAAAGGACGGTCGTGGTCCCATGAATGGTGCGCAATATGCAAGACCATTCAACGAGGAAGAGTGGAACGATGAAAAACTGGAAATACCTTTTAGTGCTTCAATTGCACCAGTTCCCATCTTGCCTATGATGTCTGATGCTTCTGTCCGAAAGGACAATCCCCTCCCTGCCAGTGGATGTACATCATGTCTATCAAGATCAATGCCTTCACCTGGCACCGCGGATCCTTCTGATCCAAATGATCAAGCTGTTAACAATGATGATGAAGATATTTTACGCATGCTTGATATTTTTAAAGATGGTGACAAATTGTTTGAGGAGGCTAATAATGATCTAGAGAACATTGCTGAAGGTGTACCACCTTTAGATGAACTTTTCGTGGGGTTGAAAGACTACTTGGCTGCTTCTCTTGCCGGTGTTTCCTCTTGCCAGAATGCTGAATTTATCACAAACGGAATGATTACTACAGGTGATGTCGATGACGTGGACTTCCTAGAGTTAATTGACCTCGACATGCCATTGTTCTTGCCGAATACACAACCTTGA 1008 0.4395 MAVTKLIPGFRFNPSGVELVVYFLKRKVMGKKFFGGVITELDIYKYAPWDLPDMSCLRTGELEWYFFCPLEKKYGSGSRVKRSTEIGYWKATGNDRVVQHNNRTVGKVRTLIFHQGKSPKGNRTDWVMHEHRLEDKDLADKGIVQDSYVVCKVFQKDGRGPMNGAQYARPFNEEEWNDEKLEIPFSASIAPVPILPMMSDASVRKDNPLPASGCTSCLSRSMPSPGTADPSDPNDQAVNNDDEDILRMLDIFKDGDKLFEEANNDLENIAEGVPPLDELFVGLKDYLAASLAGVSSCQNAEFITNGMITTGDVDDVDFLELIDLDMPLFLPNTQP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03088 335 MobiDBLite consensus disorder prediction 214 235 - -
Phco4g03088 335 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Phco4g03088 335 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Phco4g03088 335 MobiDBLite consensus disorder prediction 214 239 - -
Phco4g03088 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 211 - -
Phco4g03088 335 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Phco4g03088 335 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03088 Phco-Chr4 51853830 51856477 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco4g03088 NAM 1.8e-29 No_clan