Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03081 ATGGACACCAACCAGAACACCACCACTAGTGCATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACTAATGAACAACAACAACAACATCATGAGCATGACCATATTATTCTCCAAGTCCAAGACCCTCTGGCTTCTGGGATTTGGCCCAATAATTACCCCCACAATCACAACCCCAACCTTCTTCAAATGCATCAAGCACCCCCCTCAACAACCTCATCCATTGTACCACCACCCTCCTCCTCCTCCTCAGGCTTCCTTGGAGACATACTAGGTGTTCACAGCATGGAAGAAGATGAAGAGCCGGAAGAGGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCCGTGGACATCGACCCTGCCACCATCCGTAAGCCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGGGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTTCAATCCCTTCCTCACCCTTCCCAACCACCACAATGCATTGGTTTTGCCACCACAAATGCTAGCACCTTGCTATTAGCCCCTTCTTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACAGCTGTAACCGCAGCCACGGCCTCTTCCTCCTCCCTGGACATGCCGGGCGGACTCGGATTCGACGGTCGCGGCCACGCTTGTGACGGGTCCTCCGGCTTTAACCAGCATGAGGTAATCAGTGAATAA 846 0.5095 MDTNQNTTTSAFTNVNTTWNLEKMETNEQQQQHHEHDHIILQVQDPLASGIWPNNYPHNHNPNLLQMHQAPPSTTSSIVPPPSSSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSLPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSLDMPGGLGFDGRGHACDGSSGFNQHEVISE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03081 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 202 IPR036638 GO:0046983
Phco4g03081 281 CDD bHLH_AtIND_like 143 201 - -
Phco4g03081 281 SMART finulus 148 197 IPR011598 GO:0046983
Phco4g03081 281 Pfam Helix-loop-helix DNA-binding domain 152 191 IPR011598 GO:0046983
Phco4g03081 281 FunFam BHLH transcription factor 145 207 - -
Phco4g03081 281 Gene3D - 145 204 IPR036638 GO:0046983
Phco4g03081 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Phco4g03081 281 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 230 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03081 Phco-Chr4 51797876 51798721 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g03081 HLH 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03081 4 51797876 51798721 Phco4g03081 4 51797876 51798721 ECH
Phco4g03081 4 51797876 51798721 Phco7g01705 7 17042863 17043543 PCT