Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03045 ATGGATTCTAAGGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACGTTTGGATGTTGATGGATGTCGCCATCGCAGTGGCGTCTGTCGACCACAGTGATGAATTGAGGCGACGAAGAGACGGAATCGTGGAGCGCCTCTATGCCACGGGTTCCGTGTCATCTCCGCGGTGTCCTAATTGTGATATCGACGACGTTAGAGAAATCGAGATGCAAAGCAATGTTAATCCCTCCGTGGAGGAGGAAAAGGAAACTTGCGAAGTCTTGTTTGATGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCATAGATTCGTTGTTGGAGCTGTTGCAGAATCTAGCAGACATGGATATCACATTCCAAGCCTTACAAGAGACTGACATTGGGAGGCATGTGAATCGGTTGCGAAAGCACTCGTCTAATGACGTTAAGAAATTGGTGAAGTTGCTCGTCAGGAAATGGAAGGAGATTATAGATGAATGGATGAAGTTGAAGACGCCAAGAGAAGCGACTACTACTGTCATGGCTGACGAGGAGTCGCCACAAGAGAAAATCCTGCAAAATGGGCATCGTCAGATTCCCGATTTTGCAGACTCGCCAAATGCACACAATGAGAGTTTTGGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAATTCCTCGCAAAGAATCTCCCCTACAACCATCGGCTTCAAAACAAAGAGAGAGCAATTTTGAGTTGGATAAACTTGCTTCAGCGAGAAAGCGACTTATAGAGAACTACAAAGAGGTTGCAAATGCCAAAAAGCAAAGAACGATCCAGGTGATGGATCTCCATGAGTTGCCAAAACCCAAGAATGCCTTCTTCGGAAAAAACAAAGGTGGCACCAGTCAGCGAAGACACTGA 924 0.4567 MDSKDFRSILESAGIDVWMLMDVAIAVASVDHSDELRRRRDGIVERLYATGSVSSPRCPNCDIDDVREIEMQSNVNPSVEEEKETCEVLFDDEQKKILEIKEQLEDPHQSIDSLLELLQNLADMDITFQALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWMKLKTPREATTTVMADEESPQEKILQNGHRQIPDFADSPNAHNESFGSEHNNIEPQQRKPKAIPRKESPLQPSASKQRESNFELDKLASARKRLIENYKEVANAKKQRTIQVMDLHELPKPKNAFFGKNKGGTSQRRH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03045 307 CDD TFIIS_I 94 167 - -
Phco4g03045 307 MobiDBLite consensus disorder prediction 200 253 - -
Phco4g03045 307 Coils Coil 253 273 - -
Phco4g03045 307 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 90 181 IPR035441 -
Phco4g03045 307 SMART TFS2_5 97 168 IPR003617 GO:0005634
Phco4g03045 307 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 307 IPR044790 -
Phco4g03045 307 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 94 175 IPR035441 -
Phco4g03045 307 ProSiteProfiles TFIIS N-terminal domain profile. 92 169 IPR017923 -
Phco4g03045 307 Pfam TFIIS helical bundle-like domain 117 166 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03045 Phco-Chr4 51475445 51477308 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco4g03045 Med26 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03045 4 51475445 51477308 Phco4g03045 4 51475445 51477308 ECH
Phco7g01680 7 16601839 16603704 Phco4g03045 4 51475445 51477308 ECH
Phco4g03045 4 51475445 51477308 Phco7g01680 7 16601839 16603704 PCT