LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g03019	ATGTCAACAACTTCCCACACCATTGCTCACCACAGCTTATTTGAGGAGCAGGATCAGATTCCCACACAGATGGGGTTCTTTCCCTATCCAACAAACCTTACCTTACCTCCTTTGGGTTGCCACCAATCCTCTTTGAAAGCCTTCAGCTCCATAACACCTTCTTCACTTGCTATATCTCAACAAGATTCTACATCAAATCTAACAGAAACCCTATTTCAGAAGTCAAGAGAAGACCTCACTTCTGGCTTTGGAGGAGCTCAATTCCTGTCCTTGCATAGATCCAGTGTAAATCCATGGGCATTGGGAGAAGTGACTGATTGCTTCAGCAGTAAAAGAAGTGGATTTGATGATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGAAGCTATTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAACGGTTGGCGGAGGATCCGAGGATGGTGATAACCACATATGAAGGGAGACATGTTCACTCTCCATCGAATGATCTGGAAGACTCTTCATCTCCATCTCAGCTTGGCAACTTCTTATGGTAG	690	0.4464	MSTTSHTIAHHSLFEEQDQIPTQMGFFPYPTNLTLPPLGCHQSSLKAFSSITPSSLAISQQDSTSNLTETLFQKSREDLTSGFGGAQFLSLHRSSVNPWALGEVTDCFSSKRSGFDDHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSSSPSQLGNFLW	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g03019	229	MobiDBLite	consensus disorder prediction	214	229	-	-
	Phco4g03019	229	MobiDBLite	consensus disorder prediction	204	229	-	-
	Phco4g03019	229	Pfam	WRKY DNA -binding domain	153	209	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03019	229	SMART	WRKY_cls	152	211	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03019	229	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	81	213	IPR044810	GO:0003700
	Phco4g03019	229	SUPERFAMILY	WRKY DNA-binding domain	144	211	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03019	229	Gene3D	WRKY domain	139	205	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03019	229	ProSiteProfiles	WRKY domain profile.	147	212	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03019	229	FunFam	WRKY transcription factor 57	138	212	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g03019	Phco-Chr4	51293586	51295269	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phco4g03019		WRKY	9.7e-25	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g03019	4	51293586	51295269	Phco4g03019	4	51293586	51295269	ECH