Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03000 ATGACAGGGAAGAGAAACCAAACAATAATCAGTCCTGTGGGAAGTCCAACATCTGGTAACATCTCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAATGTAAGCCGCATCATGAAAAAGGCACTCCCAGCCAATGCCAAAATCTCAAAGGAAGCCAAAGAAACAGTTCAAGAGTGTGTCTCTGAGTTCATTAGCTTCATCACTGGTGAGGCCTCAGACAAGTGCCAGAGGGAAAAGAGAAAGACCATCAATGGTGATGATCTTCTTTGGGCCATGACAACCCTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTTCACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACTCATCAAACTCATCAAACCAATGATGGGGTGACTGAACTCAACAAGTTGCCTCATTCTTCTGTTACAACCAAAGCAGACTTCAACACTTTCAGTGGTGGCTTCTATTCTGTGGGGTCTCAAGTAACAGCTCCAAAGAGCTTCACAGATATTGGAGGGATCAACGGTTATAGAGAGAGCTCCATGAACAGTATCATTGCTCAAAGTGCGGTCAGTGGTGACCAAGATGCAAGTGGTAATAGACTGATGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 681 0.4523 MTGKRNQTIISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLHNYRETEGEKSSMAKQEEHSPTHQTHQTNDGVTELNKLPHSSVTTKADFNTFSGGFYSVGSQVTAPKSFTDIGGINGYRESSMNSIIAQSAVSGDQDASGNRLMPPNLRYRVEW 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03000 226 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco4g03000 226 Gene3D Histone, subunit A 19 154 IPR009072 GO:0046982
Phco4g03000 226 FunFam Nuclear transcription factor Y subunit B-3 21 145 - -
Phco4g03000 226 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Phco4g03000 226 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Phco4g03000 226 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Phco4g03000 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco4g03000 226 MobiDBLite consensus disorder prediction 121 145 - -
Phco4g03000 226 MobiDBLite consensus disorder prediction 1 29 - -
Phco4g03000 226 SUPERFAMILY Histone-fold 29 139 IPR009072 GO:0046982
Phco4g03000 226 MobiDBLite consensus disorder prediction 121 136 - -
Phco4g03000 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03000 Phco-Chr4 51119101 51119781 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco4g03000 CBFD_NFYB_HMF 4.3e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03000 4 51119101 51119781 Phco4g03000 4 51119101 51119781 ECH