Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02989 ATGGATGCTTCATCCTCACAGTTTGTTTCCACAAGAAGAATGGAAGTGTATGATCCTATCCACCAACTTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTCTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTAGATAATCAAGTTCAGGTGCAATCAGAGGAGATTTCTCATGGAATATTTGGAACATCTGTGATGTACAACCAAGATCATAATAGACTAGCTGATAAGACACAGAGACGTCTTGCACAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGAGGAGAAAGGCATACGTTCAGCAGTTGGAATCATGTCGTTTGAAGCTGGTGCATTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACGGATTGGTTTCTAATAATTTGGCTTTTGCTGGCTCTGTAAATTCAGGAATAACAATTTTTAAGATGGAGTATGAACATTGGGTAGAGGAGCAAAATAGACATACCTTGGAAATGAGAACTGCTTTAAGTTCTCATATAGGTGACATACAACTGGGGAATCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTGCTAAAGGTTCTGGTCCCTCTGAGTGAACCTTTGACAGAGCAAAAACGGTTTGATACATATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCCAGGACACCTAGTTGAAGGAACTCACATTCCACAGATGGACACTGCAATGGAGAGGATGGAAGCTCTGGTGAGCTTTGTGAATCAGGCTGATCATCTACGGCAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACGTGAGATTGGTCAGTTTCTGGTTGTTCTTGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGTTCTCAAAAAGCACTTACTTAA 1107 0.4137 MDASSSQFVSTRRMEVYDPIHQLSMWEENFKSNANTLTASTSIIEELDMKLDNQVQVQSEEISHGIFGTSVMYNQDHNRLADKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLVHLEQEVDHAKRQGLYIGDGLVSNNLAFAGSVNSGITIFKMEYEHWVEEQNRHTLEMRTALSSHIGDIQLGNLVQSIMNHYSKLFSMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQKRFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGHLVEGTHIPQMDTAMERMEALVSFVNQADHLRQETLRQMYRILSIREIGQFLVVLGEYFQRLRALSKLWANRSQKALT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02989 368 Gene3D - 81 131 - -
Phco4g02989 368 Coils Coil 102 129 - -
Phco4g02989 368 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Phco4g02989 368 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Phco4g02989 368 FunFam BZIP family transcription factor 82 131 - -
Phco4g02989 368 SUPERFAMILY Leucine zipper domain 83 121 IPR046347 GO:0003700|GO:0006355
Phco4g02989 368 Pfam Seed dormancy control 172 244 IPR025422 GO:0006351|GO:0043565
Phco4g02989 368 Coils Coil 265 285 - -
Phco4g02989 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 111 IPR004827 GO:0003700|GO:0006355
Phco4g02989 368 PANTHER TRANSCRIPTION FACTOR TGA9 3 364 - -
Phco4g02989 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Phco4g02989 368 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02989 Phco-Chr4 51015156 51022466 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco4g02989 DOG1 8.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02989 4 51015156 51022466 Phco4g02989 4 51015156 51022466 ECH
Phco4g02989 4 51015156 51022466 Phco2g02842 2 57681114 57685273 PCT