Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02941 ATGGCTGAGGCCAGACACTACGTTCCCCCCTCTCAACTGGATATCGAGCAAATTATTGTAGAAGCACAGCATCGATGGCTGCGTCCGGCTGAAATTTGTGCAATTCTCAGCAATTACACTAAGTTTCGAATTGCCCCAGAACCTGCTCATATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCACAACTGGAGAAAGAAAAAAGATGGAAAAACAGTAAGAGAAGCACATGAGAGACTAAAGGCTGGAAGTGTGGATGTTTTGCACTGCTACTATGCTCATGGAGAAGAAGATGAGAATTTTCAGAGACGTACATATTGGCTGCTTGAAGAGGAACTCTCTAACATTGTTCTAGTTCATTATCGACAAGTGAAGGGAACCAAGGCAAATTATACATGTGCTAAAGAAACTGAACAATCTCTTCCTTATGCTCAACAAACTGACAAAATTATGGTCAAAGCAGAGATGGACACTTCTTTTTCATCCACTCTTCATCCAAACAGTTACCAGGTTCCTTCACAAACTACGGATACAAGCATGAACAGTGCCCAATTATCAGAATATGAAGAAACTGAATCTGCATTCAATAGCCATGCAAGTTCTGATTTTTATTCTTTCCTTGAGTTACAACACCCTGTTAAGAAGATTATAGATCAACCTGCTGATTCTTATTCTCCTCAGCCACTCATAAATGAGCAAAAGAAGTTACCTGTCATTGCTGAGGCGAATTATATCTCACTCACTCAAGACAGAAAAATCATAGACATTCATAATGTTGGATTGACGTATGAATCCCCAAAACCCCTGGGCTTCTCCTCTTGGGAAGATATCTTAGGAAATAATGGTGAAAGTCAACACGTGCCTTTTCAGCCTTTATTTCCTGAAATGCAACCTGATAACATGCGAGTCAATAGCAATTTTTGTCAAGGAGATGACATAATTGTGCCACATTTGACCACCAGCATTGCTCAGCTGCATGACAATGGAAGTATCATACAAGCTGAAGGAAGTTGGCAGGGATATAGTGTTGATTCTTTACGCATGTCCACTTGGCCTATAGACAGTGTCCATTCAAGCTCGACATGTGAGGTTAGTTGTAGCAAATGTGAGCATGAAGTTAATGAAGTTGATTTTCAAAAATCCTTGGAACAGTCTCTTCTCCATCTACACAAACAGAACAAGGTTCTGATGCTAAATGATCCTCAAGAGATACTTCTGAATACAAAAGAAGAGCCAAAATCAGATTTTGAGGCCAATAGAACCCTAGATGGAATAGAAGACACACGTTTCATTTGTAAAAGGACTCTGTTAGATGGATTCCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAGTGGATGAGTAAAGAGCTTGGAGATGTGGAAGAATCAAATAAACCATCTACTTCTGGTGCTTATTGGGATACAGTTGAAAGTGAAAGTGAGGTTGGCAGCACAACTATTCCTTCTCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCAATGATCAGCTTTTTAGCATTATTGACTATTCCCCAGGCTGGGCATTTGAAGGGTCAAAAATTAAGATTATTATTTCTGGACGATTCTTAAGAAGTCAACAAGAAGCAGAACTATGTAAATGGTCATGCATGTTTGGTGAGGTTGAAGTGCCTGCAGTGATACTCACAAAAGATGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTACCTTTTTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCAGGTCAACACTGCAGGTGATGATAGAGCCAGCACTTTGGATACTTTTAGTAGACGATTTGGAGAACTGTTGTCCCTAGGGCATGCCTTTCCTCAGAATTCATATTCAATCAGTGGAAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTACGGGGGGAGGATGATGTTTGGGACAAGCTACTGGAACTTACACTACAGAAAGAGTATTCTCCAGAAGATTTACAGGAGCAGCTGCTTCAAAATCTTCTAAAAGATAGGTTGCACGCATGGCTCCTTCAGAAAATTACTGACGATGGGAAAGGCCCCAATGTATTGGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCTGCTGCTCTTGGCTACGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTGAATGTGAACTTTCGTGATGTGAATGGATGGACTGCTCTTCATTGGGCAGCATTTTATGGCAGGGAGCGCACAGTTGCTTTCCTCGTATCTCTTGGCGCAGCACCTGGATTAGTGACTGATCCATGTCCAGAATATCCTTCTGGTAGACCTCCAGCTGACCTAGCTTCTGCAAATGGACATAAAGGAATTGCAGGGTATCTCTCAGAATCTTATCTAAGTGCACAGCTCACAACTCTTGATTTGAACAAGGATGTAGGAGAAAGTCCTGGAACCAAAGTAGTCCAAAGAATCCAAAACATTGCCCAAGTTAATGATCTTGATGGTCTATCTTATGAACAGTCACTGAAAGATTCACTGGCTGCAGTGTGCAATGCCACCCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAATGCAATCATTCCAGAGAAAGCAACTGAAGGAATTTGGTGATGACAAATTTGGAATATCCGATGAACGGGCTCTTTCACTTGTAAAAATGAATGGGAAAGCACACAAGTCTGGATCACGCGATGAACCGGTCCATGCAGCTGCAATACGTATCCAGAACAAATTCCGTGGGTGGAAGGGCAGAAAAGAATTTTTGATGATTCGACAACGTATAGTAAAAATTCAGGCTCACGTGAGAGGACACCAGGTTAGGAAAAATTGTGGGAAGATAATTTGGTCTGTTGGGATATTGGAGAAGGTTATTTTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGAGGATTTAAGTCAGAGGCCAATTCTGAGGTAACTATGATAGAAGATATAACTTCCCCTGAGGAGGACTACGATTTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGATTGGAGAAAGCCTTAGCCAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGGGACCAATACCATAGGGTGTTGAATGTAGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGATAGCAGTTGTAACAATTCAGAAGAAACAAGAGACTTCAATAACCTCACTGATCTTGAAGCACTGTTGGAGGAAGATATTTTCATGCCTACAGCAACTTAG 3306 0.418 MAEARHYVPPSQLDIEQIIVEAQHRWLRPAEICAILSNYTKFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDENFQRRTYWLLEEELSNIVLVHYRQVKGTKANYTCAKETEQSLPYAQQTDKIMVKAEMDTSFSSTLHPNSYQVPSQTTDTSMNSAQLSEYEETESAFNSHASSDFYSFLELQHPVKKIIDQPADSYSPQPLINEQKKLPVIAEANYISLTQDRKIIDIHNVGLTYESPKPLGFSSWEDILGNNGESQHVPFQPLFPEMQPDNMRVNSNFCQGDDIIVPHLTTSIAQLHDNGSIIQAEGSWQGYSVDSLRMSTWPIDSVHSSSTCEVSCSKCEHEVNEVDFQKSLEQSLLHLHKQNKVLMLNDPQEILLNTKEEPKSDFEANRTLDGIEDTRFICKRTLLDGFPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGAYWDTVESESEVGSTTIPSQGHLDTYVLDPSVSNDQLFSIIDYSPGWAFEGSKIKIIISGRFLRSQQEAELCKWSCMFGEVEVPAVILTKDVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNTAGDDRASTLDTFSRRFGELLSLGHAFPQNSYSISGNEKSQLRSKISSLLRGEDDVWDKLLELTLQKEYSPEDLQEQLLQNLLKDRLHAWLLQKITDDGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFYGRERTVAFLVSLGAAPGLVTDPCPEYPSGRPPADLASANGHKGIAGYLSESYLSAQLTTLDLNKDVGESPGTKVVQRIQNIAQVNDLDGLSYEQSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEFGDDKFGISDERALSLVKMNGKAHKSGSRDEPVHAAAIRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEANSEVTMIEDITSPEEDYDFLKEGRKQTEQRLEKALARVKSMVQYPEARDQYHRVLNVVTEIQENQVKHDSSCNNSEETRDFNNLTDLEALLEEDIFMPTAT 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02941 1101 FunFam Calmodulin-binding transcription activator 2 925 973 - -
Phco4g02941 1101 Pfam IQ calmodulin-binding motif 951 968 IPR000048 GO:0005515
Phco4g02941 1101 Pfam IQ calmodulin-binding motif 927 946 IPR000048 GO:0005515
Phco4g02941 1101 ProSiteProfiles Ankyrin repeat region circular profile. 753 778 - -
Phco4g02941 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 975 IPR027417 -
Phco4g02941 1101 Gene3D - 677 825 IPR036770 -
Phco4g02941 1101 SMART iq_5 948 970 IPR000048 GO:0005515
Phco4g02941 1101 SMART iq_5 925 947 IPR000048 GO:0005515
Phco4g02941 1101 FunFam Calmodulin-binding transcription activator 2 517 613 - -
Phco4g02941 1101 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Phco4g02941 1101 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1064 - -
Phco4g02941 1101 SMART ANK_2a 753 782 IPR002110 GO:0005515
Phco4g02941 1101 SMART ANK_2a 792 821 IPR002110 GO:0005515
Phco4g02941 1101 SMART CG_1_2 18 136 IPR005559 GO:0003677
Phco4g02941 1101 SUPERFAMILY E set domains 524 609 IPR014756 -
Phco4g02941 1101 Gene3D Immunoglobulins 516 614 IPR013783 -
Phco4g02941 1101 ProSiteProfiles Ankyrin repeat profile. 753 785 IPR002110 GO:0005515
Phco4g02941 1101 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Phco4g02941 1101 Coils Coil 1017 1037 - -
Phco4g02941 1101 ProSiteProfiles IQ motif profile. 927 955 IPR000048 GO:0005515
Phco4g02941 1101 SUPERFAMILY Ankyrin repeat 698 814 IPR036770 -
Phco4g02941 1101 FunFam Calmodulin-binding transcription activator 2 682 829 - -
Phco4g02941 1101 Gene3D - 924 972 - -
Phco4g02941 1101 ProSiteProfiles IQ motif profile. 949 973 IPR000048 GO:0005515
Phco4g02941 1101 Pfam Ankyrin repeats (3 copies) 725 819 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02941 Phco-Chr4 50574149 50581183 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Phco4g02941 Ank_2 1.2e-06 CL0465