LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g02915	ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATATTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCTGAGAAGAAACGAAGACTAAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGGTGGAAGACAAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAACTACGACACCCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAGTCTAAGGAGTTGAGTTACGAATGCTTTAACAAGAGTGATGAGGTTTTAGGTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGACAACAGTCCCAACAACGTGACGATTTCGTCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTATCGTCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCTCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA	912	0.4748	MKRLGSSDSLGALMTICPPTDEHSPRNNHVYGREFQSILEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNTESDVSVKEEMITLQDSNPLCETAIPGSESKELSYECFNKSDEVLGFKDGSSDSDSSAILNEENANNNDNSPNNVTISSSGVMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g02915	303	FunFam	Homeobox-leucine zipper protein HAT5	50	114	-	-
	Phco4g02915	303	SMART	HOX_1	55	116	IPR001356	GO:0003677
	Phco4g02915	303	Gene3D	-	52	119	-	-
	Phco4g02915	303	SUPERFAMILY	Homeodomain-like	42	114	IPR009057	-
	Phco4g02915	303	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	49	297	IPR045224	GO:0003700
	Phco4g02915	303	MobiDBLite	consensus disorder prediction	210	239	-	-
	Phco4g02915	303	PRINTS	Lambda-repressor HTH signature	83	92	IPR000047	GO:0003677
	Phco4g02915	303	PRINTS	Lambda-repressor HTH signature	92	108	IPR000047	GO:0003677
	Phco4g02915	303	ProSiteProfiles	'Homeobox' domain profile.	52	112	IPR001356	GO:0003677
	Phco4g02915	303	Pfam	Homeobox associated leucine zipper	112	153	IPR003106	GO:0006355\|GO:0043565
	Phco4g02915	303	Pfam	Homeodomain	57	110	IPR001356	GO:0003677
	Phco4g02915	303	Coils	Coil	125	159	-	-
	Phco4g02915	303	CDD	homeodomain	57	113	IPR001356	GO:0003677
	Phco4g02915	303	MobiDBLite	consensus disorder prediction	1	28	-	-
	Phco4g02915	303	ProSitePatterns	'Homeobox' domain signature.	87	110	IPR017970	GO:0000981\|GO:0006355
	Phco4g02915	303	MobiDBLite	consensus disorder prediction	209	239	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g02915	Phco-Chr4	50325040	50326403	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Phco4g02915		Homeodomain	3.3e-16	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g02915	4	50325040	50326403	Phco4g02915	4	50325040	50326403	ECH
	Phco4g02915	4	50325040	50326403	Phco2g02898	2	58095200	58096756	PCT