Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02864 ATGTGGATTCTATCTATGAATTCTCAAGACACAGCGATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTGTACTGTGGAGGCTGTAGGACGTTGCTAATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGCCTCTAATCAGGTAGCTCATGTCCATTGTGGGAACTGCCGGACAGCCCTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTATTTGTCACTATATTACTAATACGAACAATGGACGGCTTCCAATCCCTGTCCATAGACCCAATGGGACAACCAATGCTGGAACATTACCTTCTACTTCAACATCAATGCCTCAATCTCAAAGTCAAACAGTAGTAGTAGAAAATCCAATGTCTGTGGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTCACAACCGATAAGAAATAG 561 0.4528 MWILSMNSQDTAMQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPASNQVAHVHCGNCRTALMYPYGAPSVKCAICHYITNTNNGRLPIPVHRPNGTTNAGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02864 186 PANTHER PROTEIN LSD1 14 185 IPR040319 -
Phco4g02864 186 Pfam LSD1 zinc finger 58 82 IPR005735 -
Phco4g02864 186 Pfam LSD1 zinc finger 96 120 IPR005735 -
Phco4g02864 186 Pfam LSD1 zinc finger 19 43 IPR005735 -
Phco4g02864 186 NCBIfam zinc finger domain, LSD1 subclass 55 85 IPR005735 -
Phco4g02864 186 NCBIfam zinc finger domain, LSD1 subclass 16 46 IPR005735 -
Phco4g02864 186 NCBIfam zinc finger domain, LSD1 subclass 93 121 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02864 Phco-Chr4 49927906 49933448 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phco4g02864 zf-LSD1 9.2e-12 No_clan