Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02862 ATGAAACAGTTGAAATTGGCTGCAGAATTTCACGCTATAGAGGATAATCTTCTCAGGCATAAACCAGAAATGGAAATCACATTTGATTCTTCAGCCAGTCCGCAGCATAAAAAGATATCAGCCAGATGGGACCCGGTCGAAGCATGTCGGCCTATAATTGATGAAGCCCCTGTGTTCTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGTACGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGGTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATGATTCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAGATGGGAGCCCTCAGTGGAGGACATTGAAGGTGAATACTGGAGAATAATAGAGCAACCAACTAATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCCTTAACTAAGAATGATTCAGACAGGTATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCAAGATTGCCAGGTTCTGCGTTATGTTTTGAAGGAAGTGATATATCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTCTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAACCCATGCTCCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAATTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTACATTGCACTGTTCAGAATTCAGGTCAATTTGTTATTACCTTTCCAAGGGCGTACCACTGTGGCTTCAATTGTGGCTTCAATTGCGCAGAGGCTGTAAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGTTGAGCTTTATAGTTTGCAGTGCCGTAAGACTTCATTGTCGCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCATTGCAGAGCTAACTCTTAATGAAAAAGAAAATCTAAAATATATAAAATGGAGCAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAACTATGGAAAAGGACAGGCTTGAATGTCTTCCCACTCATTTAAAGAAGCTTAGGATGGACAGCGAGTTTGATTTGTTTGAGGAAAGAGAATGTTTCTCTTGCTTCTATGACTTGCACCTATCTGCCATAGGTTGCAAGTGCTCGCCCGATAGTTATTCGTGCCTCAAGCACTCACATTTGTTTTGCTCATGTGAGATGGACGAAAGATTTGTACTGTTTCGTTATACCATGAATGAACTAAGTACATTGATTGAGGCATTAGAAGGAGACGCACATGCTATTGAAGTGTGGGCAAATAGAAACACTGGACTGGTTTCTGCTAATGCTGAGGATGCTTGCATCTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTCAACATATTGTGCAAGAACCAATGATAAGTCAAGTTCAAATATACCTAGCAGTTCTTACAGCCACATTTCTGCAGAGTTAGTCCATTCAGAATTTCATCTTGAAACTTATAGGGCACCATATGGCACTAAAGATTGTAAAAAAGATATCTTGAATGAAAAAAAATTGGTGATGGACAATGAAGATAAGGTGAAGGAAGGTTCTCTGGATTTGAATATTGATGTTATGTTTGTTGAACCTGAAAATCATTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGAAAAGTCTGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGAATCCTGGGGCTAGATGTATAGCTCCCTTGGAGAAAGAATTTTCATCATGTTCAAGGGACGTTCAAAATTCTTGTACACTAGATGGTTATAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTCGAGAGAACAACTCAACGGCGTATTTAAAATAGGGGATGTTGAAACGTCAAATACAAGTGTATCTTTGACGAACCAAAACTTCTTAATGCAGAAGATTATTGTTTCTGTTGAGCCCGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTTTGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTAGCATGGAAGAACGTCCAGGTGAGGCCTTCACAAACACATCAGCAGATAAGTGCTGGGAGTCAGTTCTTGAGAGACTAAATCATGAAACCAAGAAGCTAAGGAATCAAGGTGAAAGAGAACCTCCTCCCTCGGAGCTTCTACAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCTATTGAAGCTCTGGATCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGACAGTGGAATTGATGACTCTAAGCTCAGTCATGGTTCAAGTAACTCTCTAAGTGATGTCAAGACCAGACTTCTTGGTCCTGGTTTGATAAAGCTGGAACAAGATAGCAGCAGAAGACATTGTGATTCTTTTGAAGAGATGAAATTGGTGCTAGAAGGGTTATTGAAAAAGGCGAGTGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGTACAGTTCACCAAGTGGAGAGTGGCATTTGTAACACTGATTGAGGAAATCCAGAAAGCTTGA 3156 0.4087 MKQLKLAAEFHAIEDNLLRHKPEMEITFDSSASPQHKKISARWDPVEACRPIIDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKQSKMGTGRRTAKSGSEANGASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNDSNEYGKVSDYNHWQRWEPSVEDIEGEYWRIIEQPTNEVEVYYGADLETGSLGSGFPKTSSLTKNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGTHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHCTVQNSGQFVITFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCAIAELTLNEKENLKYIKWSSACGKDGVLTKAIKTRITMEKDRLECLPTHLKKLRMDSEFDLFEERECFSCFYDLHLSAIGCKCSPDSYSCLKHSHLFCSCEMDERFVLFRYTMNELSTLIEALEGDAHAIEVWANRNTGLVSANAEDACIYKQDAESYKGWKSSTYCARTNDKSSSNIPSSSYSHISAELVHSEFHLETYRAPYGTKDCKKDILNEKKLVMDNEDKVKEGSLDLNIDVMFVEPENHFLHAAEYHHNKSVPYVGKVCYSEVRKKQDNMNPGARCIAPLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSREQLNGVFKIGDVETSNTSVSLTNQNFLMQKIIVSVEPVNLGIVMCGKLWCSKHAIYPKGFKSRVKFLSILDPPRICNYVSEVFDAGFLGPLFKVSMEERPGEAFTNTSADKCWESVLERLNHETKKLRNQGEREPPPSELLQSINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSDSGIDDSKLSHGSSNSLSDVKTRLLGPGLIKLEQDSSRRHCDSFEEMKLVLEGLLKKASAEELSAMHKLFSSDVQFTKWRVAFVTLIEEIQKA 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02862 1051 Pfam jmjN domain 57 90 IPR003349 -
Phco4g02862 1051 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 896 - -
Phco4g02862 1051 Pfam F/Y-rich N-terminus 812 856 IPR003888 GO:0005634
Phco4g02862 1051 Gene3D Cupin 41 414 - -
Phco4g02862 1051 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Phco4g02862 1051 SMART cupin_9 264 430 IPR003347 -
Phco4g02862 1051 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Phco4g02862 1051 MobiDBLite consensus disorder prediction 128 146 - -
Phco4g02862 1051 SUPERFAMILY Clavaminate synthase-like 172 451 - -
Phco4g02862 1051 SMART JmjN_1 55 96 IPR003349 -
Phco4g02862 1051 SMART fyrc_3 865 959 IPR003889 GO:0005634
Phco4g02862 1051 Pfam F/Y rich C-terminus 863 950 IPR003889 GO:0005634
Phco4g02862 1051 MobiDBLite consensus disorder prediction 120 166 - -
Phco4g02862 1051 Gene3D - 806 945 - -
Phco4g02862 1051 ProSiteProfiles FYR domain FYRN motif profile. 801 859 IPR003888 GO:0005634
Phco4g02862 1051 FunFam Putative lysine-specific demethylase JMJ16 807 945 - -
Phco4g02862 1051 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Phco4g02862 1051 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Phco4g02862 1051 ProSiteProfiles FYR domain FYRC motif profile. 861 951 IPR003889 GO:0005634
Phco4g02862 1051 SMART fyrn_3 815 859 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02862 Phco-Chr4 49912024 49919738 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco4g02862 JmjC 6.1e-44 CL0029