Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02859 ATGGCTTTGTCTTCTCAATTACTTGTTCATTGTGGCTTATTACTCTTCCTCATCCACCTTCAGCTACACCACCTCTTCATTGGTGTATCTGCCTCCACTTTAAGCATCACCACAGACACAGAAGCCTTGATGTCATTCAAGTCTCAACTGACAAATGACACTCTCAATCACTTATCTTCCTGGAACCAAAATTCATCCCCGTGCAATTGGACTGGTGTCCAATGTGACAGGCTTGGCCAAAGAGTCACTGCCTTGGAGCTTTCAGGCTTGGGACTCTCAGGTCACTTAAGTCCTTATATTGGTAACCTCTCCTCTCTTCAGTCCCTCCAATTGCAGAATAACCAACTCATTGGACTCATTCCTGACCAAATTGGCAACCTATTCAGTTTGAGAGTTCTAAATATGAGCTCTAATATGTTAGAAGGAAAACTTCCTTCCAACATGACCCACTTGAATGAGCTTCAGATTCTTGATTTATCCTCAAACAAGATTGTCAGCAAGATTCCTGAAGACATCAGCAGCTTGAAAAGGCTTGAGGTTTTGAAACTGGGAAAGAATAGCCTCTATGGTGCAATCCCAGCATCTCTAGGAAATATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGTTGGATTCCCAGTGACTTGGGTAGGCTGCATGATTTGATTGAGCTTGATCTCATTCTTAACAATCTCAATGGGACTGTTCCACCTGTTGTATACAACTTATCTTCCCTCGTTAACTTTGCCTTAGCTTCAAACTCTTTCTGGGGTGAGATTCCTCAGGATGTTGGTCTCAAACTTCCAAAACTCATAGTGTTCAATATCTGCTTCAATTATTTCACTGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCCAACTTTTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATTGGTTATAACAGGATAGTGAGTTCAGGTGTCACAGGTTTAGACTTCATTACTTCTTTGACAAACAGTACTCGACTCAACTTTCTGGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCTGAAACCATTGGCAATCTCTCCAAGGACCTGTCAACATTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCCCCTCCATTGGTCTTCTTAGTGGCTTGAAGTTGTTAAACATAAGCTACAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAGAGGAACTACAAGAACTATCTCTAGCTGGAAATGACATATCAGGGGTTATTCCAGACTCCCTTGGTAACCTCCTCAAGTTAAACCTGATTGATTTGTCAAGAAACAAACTAGTGGGGAGAATACCTACCAGTTTTGGGAATTTGCAAAGTCTGCTTTACATGGACTTATCAAGCAACCAACTCAATGAAAGCATTCCTATGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAATTTGTCAACGAACTCTTTGAGTGGACCAATACCTCAAATTGGGAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAACCAATTGGATGGTGACATCCCCAGTTCATTCAGCAATTGTCTCAGCTTGGAAAATTTGTTTTTGAGCAGGAATCAGCTTTCGGGTTCCATTCCAAAGGCTCTTGCAGAAGTGAGAGGCTTGGAAACTTTGGACCTATCCTCCAACCAACTCTCTGGAACCATTCCTGTTGAACTTCAAAACTTACAGGTGCTTAGGCTCTTAAACCTCTCGTATAATGATTTAGAAGGAGCCATTCCAAGTGGTGGAGTTTTCCAAAATCTATCTGCTGTACATTTAGAAGGCAATGGAAATCTCTGCTTGCAAGCCCCGTGTGTGAATCGTGGCGAAGGAAGAAGAAATGTAAGACATTACATCATCGTAGCCGTTGCTGTAGCATTGGTACTGTGTCTCACAATTGGCTCAATACTATATATAAAGAGCAGAAAGGTGAAGGTATCATCATCATCATCAGAACAGCTAAAACCTCTTGCACTAATGATCTCTTATGATGAGCTTCGTCTAGCAACTGAGGAGTTCAACCAGGAAAACTTACTAGGTGTTGGGAGCTTTGGCTCAGTTTACAAAGGCAATCTAAGTTATGGAACTACTGTTGCAGTGAAAGTTCTTGACACCCTAAGAACTGGTTCTCTAAAAAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTCATCACATCATGCTCCAGTGTTGACTTCAAAAACAATGACTTTCTGGCTCTGGTGTATGAGTATCTATGCAATGGTAGCTTGGAAGACTGGATTAAGGGGAAGAGAAACCATGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCAATAGATGTTGCGTGTGCATTGGACTACCTGCACAATGACAGTGAAATCCCAGTGGTGCACTGTGATTTGAAGCCTAGCAACATTCTCTTGGACGCAGACATGACGGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTTATTCAAAGATCAACCAATCAAGTTTCTATTAGCTCCAGTCGTATTCTTAGGGGCTCAATTGGCTACATACCTCCAGAATATGGATGGGGGGAGAAAGCATGTGCAGCTGGAGATGTATATAGTTTTGGTATAGTGTTGCTAGAGTTATTCTCTGGGAAAAGTCCAACTGATGAATGCTTCAGTGGAGGGCTAAGCATAAGAAGATGGGTGCATTCAGCATTCAAAGAGAAGACAATGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGCATGATGACCCTTCGGAGGGACCAAATAACGTACAAGTGTATTGTGTGGATGCAATTCTAGGAGTAGCCATAGCTTGTACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTCGCCAACTCAAAGCTTCTAGAGACTCTTTGAATCACTATGATCACACTTCTACTGCACACATCGTTTCAATAAACAAAAAAGAGAGTGCAAGAGATGGAACCTGCGACGGGGATTTCTACCGCGAACTCGGTGTAGCAGAAGACGGAGAGCAAGGCGGAGACACCGGAAACGACATAGGAAAGCGCCATTCCCTTATTCTCAAATTTTCCGTTCTCCTTCTCAGTGTCAGTGTCACCCTCCTTCTCATTCTCACGCTCTCCTTCTCTGGTAGGGTTTCTTGTTTTCGCTTTGATTTTATTTGGTTTCAATCGGTGTGTATCTTTGATTTTATTTACTTTGATTTCATTAATTAA 3330 0.424 MALSSQLLVHCGLLLFLIHLQLHHLFIGVSASTLSITTDTEALMSFKSQLTNDTLNHLSSWNQNSSPCNWTGVQCDRLGQRVTALELSGLGLSGHLSPYIGNLSSLQSLQLQNNQLIGLIPDQIGNLFSLRVLNMSSNMLEGKLPSNMTHLNELQILDLSSNKIVSKIPEDISSLKRLEVLKLGKNSLYGAIPASLGNISSLKNISFGTNFLTGWIPSDLGRLHDLIELDLILNNLNGTVPPVVYNLSSLVNFALASNSFWGEIPQDVGLKLPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNFLEGTVPPGLGNLPFLRMYNIGYNRIVSSGVTGLDFITSLTNSTRLNFLAIDGNMLEGVIPETIGNLSKDLSTLYMGQNRFNGSIPPSIGLLSGLKLLNISYNSISGEIPHELGQLEELQELSLAGNDISGVIPDSLGNLLKLNLIDLSRNKLVGRIPTSFGNLQSLLYMDLSSNQLNESIPMEILNLPTLSNVLNLSTNSLSGPIPQIGRLSGVASIDFSSNQLDGDIPSSFSNCLSLENLFLSRNQLSGSIPKALAEVRGLETLDLSSNQLSGTIPVELQNLQVLRLLNLSYNDLEGAIPSGGVFQNLSAVHLEGNGNLCLQAPCVNRGEGRRNVRHYIIVAVAVALVLCLTIGSILYIKSRKVKVSSSSSEQLKPLALMISYDELRLATEEFNQENLLGVGSFGSVYKGNLSYGTTVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGKRNHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDADMTAKVGDFGLARLLIQRSTNQVSISSSRILRGSIGYIPPEYGWGEKACAAGDVYSFGIVLLELFSGKSPTDECFSGGLSIRRWVHSAFKEKTMEAIDPELVSLILHDDPSEGPNNVQVYCVDAILGVAIACTADNPDERIGIRDAVRQLKASRDSLNHYDHTSTAHIVSINKKESARDGTCDGDFYRELGVAEDGEQGGDTGNDIGKRHSLILKFSVLLLSVSVTLLLILTLSFSGRVSCFRFDFIWFQSVCIFDFIYFDFIN 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02859 1109 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 246 995 - -
Phco4g02859 1109 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 783 1008 - -
Phco4g02859 1109 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Phco4g02859 1109 FunFam Receptor protein kinase CLAVATA1 35 193 - -
Phco4g02859 1109 Pfam Protein tyrosine and serine/threonine kinase 704 919 IPR001245 GO:0004672|GO:0006468
Phco4g02859 1109 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Phco4g02859 1109 SMART LRR_typ_2 103 127 IPR003591 -
Phco4g02859 1109 SMART LRR_typ_2 151 175 IPR003591 -
Phco4g02859 1109 SMART LRR_typ_2 591 616 IPR003591 -
Phco4g02859 1109 SMART LRR_typ_2 471 495 IPR003591 -
Phco4g02859 1109 SMART LRR_typ_2 423 446 IPR003591 -
Phco4g02859 1109 SMART LRR_typ_2 567 590 IPR003591 -
Phco4g02859 1109 SUPERFAMILY L domain-like 37 333 - -
Phco4g02859 1109 ProSiteProfiles Protein kinase domain profile. 702 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02859 1109 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 233 340 - -
Phco4g02859 1109 Gene3D Ribonuclease Inhibitor 150 235 IPR032675 -
Phco4g02859 1109 Pfam Leucine rich repeat 425 484 IPR001611 GO:0005515
Phco4g02859 1109 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Phco4g02859 1109 Pfam Leucine rich repeat 522 580 IPR001611 GO:0005515
Phco4g02859 1109 CDD STKc_IRAK 708 996 - -
Phco4g02859 1109 Gene3D Ribonuclease Inhibitor 236 338 IPR032675 -
Phco4g02859 1109 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 636 - -
Phco4g02859 1109 Gene3D Phosphorylase Kinase; domain 1 663 782 - -
Phco4g02859 1109 ProSiteProfiles Leucine-rich repeat profile. 569 592 IPR001611 GO:0005515
Phco4g02859 1109 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Phco4g02859 1109 Gene3D Transferase(Phosphotransferase) domain 1 783 1022 - -
Phco4g02859 1109 Gene3D Ribonuclease Inhibitor 339 636 IPR032675 -
Phco4g02859 1109 SUPERFAMILY Protein kinase-like (PK-like) 679 995 IPR011009 -
Phco4g02859 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Phco4g02859 1109 SMART LRR_sd22_2 423 444 - -
Phco4g02859 1109 SMART LRR_sd22_2 447 473 - -
Phco4g02859 1109 SMART LRR_sd22_2 151 174 - -
Phco4g02859 1109 SMART LRR_sd22_2 175 207 - -
Phco4g02859 1109 SMART LRR_sd22_2 567 593 - -
Phco4g02859 1109 SMART serkin_6 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02859 1109 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
Phco4g02859 1109 FunFam LRR receptor-like serine/threonine-protein kinase EFR 673 782 - -
Phco4g02859 1109 SUPERFAMILY L domain-like 378 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02859 Phco-Chr4 49890145 49897200 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g02859 PK_Tyr_Ser-Thr 6.7e-39 CL0016