Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02857 ATGGCTTTGTCTTCTCAATTACTTGTTCCTTTTGGCTTATTACTCATCCTCCTCCACCTTCAGCTACACCACCTCTTCATTGGTGTATCAGCAGCCACTTTAAGCATCACCACAGACACAGAAGCCTTGATCTCATTCAAGTCTCAACTGAGAAATGACACTCTTGATCCCTTATCTTCCTGGAACCATAATTCATCCCCATGCAATTGGACTGGTGTCCAATGTGACAGGCTTGGCCAAAGAGTCACTGCCTTGGAGCTTTCAGGCTTGGGACTCTCAGGTCACTTAAGTCCTTATATTGGTAATCTCTCCTCTCTTCAGTCCCTCCAATTGCAGAATAACAAACTCACTGGACTCATTCCTGACCAAATTGGCAACCTATTCAGTTTGAGAGTTCTAAATATGAGCTCTAATATGTTAGAAGGAAAACTTCCTTCCAACATGACCCACTTGAATGAGCTTCAGATTCTTGATTTATCCTCAAACAAGATTGTCAGCAAGATTCCTGAAGTCATCAGCAGCTTGAAAAAGCTTCAGGCTTTGAAACTGGGAAGGAATAGCCTCTACGGTGCAATCCCAGCATCTCTAGGCAACATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGTTGGATTCCCAGCGACTTGGGTAGGCTGCATGATTTGATTGAGCTTGATCTCATTCTTAACAATCTCAATGGAACTGTTCCTCCTGTTATATACAACTTATCTTCCATTGTAAACTTTGCGTTGGCTGGAAACTCTTTGTGGGGTGAGATTCCACAGAATGTTGGGGTCAAACTTCCAAAACTCATAGTGTTCAAGATCTGCTTCAATTATTTCACTGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCCAACTTTTTGGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCACATGTATGATATTTCGTATAACAGGATAGTGAGTTCGGGCGTCAGAGGTCTAGACTTCATCACTTCTCTGACTAACAGCACCCACCTGAAGTTTCTGCAAATTGCAGAAAATATGCTGGAAGGTGAAATTCCTGAAAGCATTGGCAATCTCTCCAAGGATCTCACATATTTATACATGGGAAAAAATCATTTCAGCGGAAGCATACCCACCTCCATTGGTCGTCTTAGTGGCTTAGGGGTGTTAAACATAAGCTACAATTCAATCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAACAGAACTACAAGAACTATCTCTTGCTGGGAATGAGATATCAGGGGTTATTCCAGACTCCCTTGGTAACCTCCTCAAGTTATACTTGATTGATTTGTCGAGAAACAAACTAGTGGGGAGAATACCTACCACTTTTGGGAATTTGGAAAGTCCGCTTTACATGGACTTATCAAGCAACCAACTGAATGGAAGCATTCCTGTGGAAATCCTCAATTTCCCAACTTTGAGTAATGTTTTGAACTTGTCGATGAACTCTTTGAGTGGACCAATACCTCAAATTGGGAGATTGAGTCGTGTTGCCTCCATTGACTTTTCTAGCAACCAATTGGATGGTGGCATCCCCAGTTCTTTCAGCAATTGTCTCAGCTTGGAAAATTTGTTTTTGACAAGGAATCGGCTTTCGGGTTCCATTCCAAAGGCTCTTGGAGAAGTGAGAGGCTTGGAAACTATGGACCTATCCTCCAACCAACTCTCTGGAACCATTCCTGTTGAACTTCAAAATTTACAGGCGCTTCGGCTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCCGTTCCAAGTGGTGGAGTTTTCCAAAATCTATCTGCTGTACATTTAGAAGGCAATGGAAATCTCTGCTTGCAATCCCCATGTGTGAATCATGGCGAAAGAAGAAGAAATGTCGGACATTACATCATCGAAGCTGTTGCAGTAGCATTGGTACTGTGTCTCACAATTGGCTCAATACTATATATAAAGAGCAGAAAGGTGAAGGTAGCATCATCATTATCTGAACAGCTAAAACCTCTTGCACTAATGATCTCTTATAATGACCTACGCTTAGCAACTGAGGAGTTCAACCAGGAAAACTTATTAGGAGTTGGGAGCTTTGGCTCAGTTTACAAAGGCAATCTAAGTCATGGAACTACTGTTGCAGTAAAAGTTCTTGACACCCTAAGAACTGGTTCTCTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTTGAGGCATCGAAATCTGGTTAAGCTCATCACATCATGCTCCAGTGTTGACTTCAAAAACAATGACTTTCGGGCTCTGGTGTATGAGTATCTATGCAATGGTAGCTTGGAAGATTGGATTAAGGGGAGGAGAAAGCATGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCAGTCGACGTTGCTTGTGCATTGGATTACCTGCACAATGATAATGAAATCCCAGTTGTGCACTGCGATTTGAAGCCTAGCAACATTCTATTGGACGCAGATATGACGGCAAAGGTTGGAGACTTTGGACTGGCTAGGTTGCTTATTCAAAGATCAACTAATCAAGTTTCCATTAGCTCCAGTCATGCTCTTAGGGGTTCAATTGGCTACATACCTCCAGAATATGGATGGGGAGAGAAAGCATGTGCAGCTGGAGATGTATATAGTTTTGGCATAGTGTTGCTAGAGTTATTCTCTGGGAAAAGTCCAACTGATGAATGCTTCACTGGAGGGCTAAGCATAAGAAGATGGGTGCATTCAGCATTTAAAGAGAAGACAATGGAAGCCATTGACCCTGAGTTGGTGTCCCTCATTTTGTATGATGACCCTTCTGAGGGACCAAATAACGTACAAGTGTATTGTGTGGATGCAATCATAGGAGTAGCCATAGCTTGTACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTCGCCAACTCAAAGCTTCTAGAGACTCTTTGAATCACTCTGATCACACTTCTACTGCACACATCGTTTCACTAAAGTAA 3054 0.425 MALSSQLLVPFGLLLILLHLQLHHLFIGVSAATLSITTDTEALISFKSQLRNDTLDPLSSWNHNSSPCNWTGVQCDRLGQRVTALELSGLGLSGHLSPYIGNLSSLQSLQLQNNKLTGLIPDQIGNLFSLRVLNMSSNMLEGKLPSNMTHLNELQILDLSSNKIVSKIPEVISSLKKLQALKLGRNSLYGAIPASLGNISSLKNISFGTNFLTGWIPSDLGRLHDLIELDLILNNLNGTVPPVIYNLSSIVNFALAGNSLWGEIPQNVGVKLPKLIVFKICFNYFTGGIPGSLHNLTNIQVIRMASNFLEGTVPPGLGNLPFLHMYDISYNRIVSSGVRGLDFITSLTNSTHLKFLQIAENMLEGEIPESIGNLSKDLTYLYMGKNHFSGSIPTSIGRLSGLGVLNISYNSISGEIPHELGQLTELQELSLAGNEISGVIPDSLGNLLKLYLIDLSRNKLVGRIPTTFGNLESPLYMDLSSNQLNGSIPVEILNFPTLSNVLNLSMNSLSGPIPQIGRLSRVASIDFSSNQLDGGIPSSFSNCLSLENLFLTRNRLSGSIPKALGEVRGLETMDLSSNQLSGTIPVELQNLQALRLLNLSYNDLEGAVPSGGVFQNLSAVHLEGNGNLCLQSPCVNHGERRRNVGHYIIEAVAVALVLCLTIGSILYIKSRKVKVASSLSEQLKPLALMISYNDLRLATEEFNQENLLGVGSFGSVYKGNLSHGTTVAVKVLDTLRTGSLKSFFAECEAMKNLRHRNLVKLITSCSSVDFKNNDFRALVYEYLCNGSLEDWIKGRRKHANGNGLNLMERLNIAVDVACALDYLHNDNEIPVVHCDLKPSNILLDADMTAKVGDFGLARLLIQRSTNQVSISSSHALRGSIGYIPPEYGWGEKACAAGDVYSFGIVLLELFSGKSPTDECFTGGLSIRRWVHSAFKEKTMEAIDPELVSLILYDDPSEGPNNVQVYCVDAIIGVAIACTADNPDERIGIRDAVRQLKASRDSLNHSDHTSTAHIVSLK 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02857 1017 Gene3D Phosphorylase Kinase; domain 1 663 782 - -
Phco4g02857 1017 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Phco4g02857 1017 SUPERFAMILY L domain-like 378 630 - -
Phco4g02857 1017 SUPERFAMILY Protein kinase-like (PK-like) 683 995 IPR011009 -
Phco4g02857 1017 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Phco4g02857 1017 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Phco4g02857 1017 CDD STKc_IRAK 708 996 - -
Phco4g02857 1017 Pfam Protein kinase domain 703 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02857 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 783 1008 - -
Phco4g02857 1017 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Phco4g02857 1017 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Phco4g02857 1017 FunFam Receptor protein kinase CLAVATA1 35 193 - -
Phco4g02857 1017 ProSiteProfiles Protein kinase domain profile. 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02857 1017 Gene3D Transferase(Phosphotransferase) domain 1 783 1015 - -
Phco4g02857 1017 SUPERFAMILY L domain-like 37 334 - -
Phco4g02857 1017 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 233 340 - -
Phco4g02857 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Phco4g02857 1017 Gene3D Ribonuclease Inhibitor 196 339 IPR032675 -
Phco4g02857 1017 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 637 - -
Phco4g02857 1017 SMART serkin_6 702 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02857 1017 SMART LRR_typ_2 447 470 IPR003591 -
Phco4g02857 1017 SMART LRR_typ_2 591 616 IPR003591 -
Phco4g02857 1017 SMART LRR_typ_2 567 590 IPR003591 -
Phco4g02857 1017 SMART LRR_typ_2 151 175 IPR003591 -
Phco4g02857 1017 SMART LRR_typ_2 127 150 IPR003591 -
Phco4g02857 1017 SMART LRR_typ_2 423 446 IPR003591 -
Phco4g02857 1017 SMART LRR_typ_2 103 126 IPR003591 -
Phco4g02857 1017 Gene3D Ribonuclease Inhibitor 340 637 IPR032675 -
Phco4g02857 1017 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Phco4g02857 1017 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 345 997 - -
Phco4g02857 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 673 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02857 Phco-Chr4 49879536 49882697 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g02857 Pkinase 4.2e-40 CL0016