Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02822 ATGGAAAACATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTCTCGTCGGGGTCGCTGCGGAAGAGCCTGAGCAGGCAGTTCACGCGGCAGGCGTCGCTGGATCCGCGCCGGAACAACCAGCGGTTCAGCTTCGGGCGGCAGTCGTCGTTGGATCCGATACGGCGAAGCGCCGAAGATGAGCAAGCGGAGCTCACCGTGCCCGAGAATCTTGACTCCACCATGCAGCTGCTCTTCATGGCGTGCCGCGGCGACGTCAGGGGAGTTGAGGATTTGCTCAACGAAGGCATCGACGTCAACAGCATCGACCTCGACGGCCGCACCGCCCTCCACATCGCCGCCTGCGAAGGCCACGCGGAAGTCGCCCGGCTCCTCCTCACCCGCAAGGCCAACATCGACGCTCGCGATCGCTGGGGCAGTACCGCGGCAGCTGATGCCAAATACTATGGAAATACAGAGATTTATTACATGTTGAAGGCTCGTGGAGCTAAAGTGCCGAAAACCAGAAAGACTCCAATGACCGTTGCGAATCCTCGAGAAGTTCCGGAATATGAACTCAACCCGTTAGAGCTACAGGTTCGGAAGAGCGATGGTATTTCAAAAGGAACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGACAAGGACAGTTATACAGATCCTGATACCATAAATTCCTTCAAACATGAGCTCACATTATTAGAAAGGGTGCGACATCCCAATGTGATCCAGTTTGTTGGAGCTGTAACCCAAAATATACCTATGATGATTGTGCGTGAGTACCATGCTAAGGGTGACCTGGCAAGCTATCTCCAAAAGAAAGGGCGTTTGTCCCCATCAAAACTTCTATGTTTTGCTCTTGATATTGCTAGGGGCATGAACTATCTTCATGAATGCAAACCAGATCCGGTTATTCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAGATAGGAGGATTTGGCACTGTGAGATTTTCTCTAATCTCATCTGATGGAGCAAAGCTGGTGCAGCCTGACCCTAACATTGATCTTTCAAGCTTGTACGTGGCACCGGAGATTTACAAAGATGAAGTATTCGATAGAAGTGTTGATGCATATTCTTTTGGTCTCATTATATATGAGATGTTAGAGGGTACACATCCCTTCCATCCCAAGTCCTCGGAGGAGGTGGTGAAAATGATGTGCTTAGAGGGGAAAAGACCGACATTCAAGATCAAAACAAAACATTATCCACCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCAACCCCTGTTGTCAGGCCAACATTTTCTCAGGTCATTGTACGGTTGAACAAAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAGCTTCCTTGGAAATAA 1428 0.486 MENIAAQLKRGISRQFSSGSLRKSLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSAEDEQAELTVPENLDSTMQLLFMACRGDVRGVEDLLNEGIDVNSIDLDGRTALHIAACEGHAEVARLLLTRKANIDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYTDPDTINSFKHELTLLERVRHPNVIQFVGAVTQNIPMMIVREYHAKGDLASYLQKKGRLSPSKLLCFALDIARGMNYLHECKPDPVIHCDLKPKNILLDNGGQLKIGGFGTVRFSLISSDGAKLVQPDPNIDLSSLYVAPEIYKDEVFDRSVDAYSFGLIIYEMLEGTHPFHPKSSEEVVKMMCLEGKRPTFKIKTKHYPPDLKELIEECWDPTPVVRPTFSQVIVRLNKIVANCSKQGWWKDTFKLPWK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02822 475 PIRSF ILK 8 474 - -
Phco4g02822 475 Pfam Protein tyrosine and serine/threonine kinase 200 452 IPR001245 GO:0004672|GO:0006468
Phco4g02822 475 Gene3D Transferase(Phosphotransferase) domain 1 270 469 - -
Phco4g02822 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Phco4g02822 475 ProSiteProfiles Protein kinase domain profile. 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02822 475 Gene3D Phosphorylase Kinase; domain 1 187 269 - -
Phco4g02822 475 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Phco4g02822 475 SMART serkin_6 194 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02822 475 FunFam Integrin-linked protein kinase 1 47 185 - -
Phco4g02822 475 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 456 - -
Phco4g02822 475 Gene3D - 31 185 IPR036770 -
Phco4g02822 475 Pfam Ankyrin repeats (many copies) 93 143 IPR002110 GO:0005515
Phco4g02822 475 FunFam Integrin-linked protein kinase family 270 469 - -
Phco4g02822 475 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
Phco4g02822 475 PRINTS Tyrosine kinase catalytic domain signature 377 399 IPR001245 GO:0004672|GO:0006468
Phco4g02822 475 PRINTS Tyrosine kinase catalytic domain signature 424 446 IPR001245 GO:0004672|GO:0006468
Phco4g02822 475 PRINTS Tyrosine kinase catalytic domain signature 266 279 IPR001245 GO:0004672|GO:0006468
Phco4g02822 475 PRINTS Tyrosine kinase catalytic domain signature 305 323 IPR001245 GO:0004672|GO:0006468
Phco4g02822 475 MobiDBLite consensus disorder prediction 23 57 - -
Phco4g02822 475 MobiDBLite consensus disorder prediction 23 52 - -
Phco4g02822 475 SUPERFAMILY Protein kinase-like (PK-like) 203 453 IPR011009 -
Phco4g02822 475 SMART ANK_2a 74 102 IPR002110 GO:0005515
Phco4g02822 475 SMART ANK_2a 106 135 IPR002110 GO:0005515
Phco4g02822 475 FunFam serine/threonine-protein kinase STY46-like 187 270 - -
Phco4g02822 475 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02822 Phco-Chr4 49565535 49572175 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Phco4g02822 PK_Tyr_Ser-Thr 2.8e-50 CL0016