Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02810 ATGGCACTTTGTATGCAGAGAGATTCAGTATTGAACAGGCTCATGGATTGTGGCAAGTATGTGAGGTACACACCTGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCGGAGTGCCCCAAGCCTAGTTCTTCCAGAAGGCAACAACTCATTAGGGAGTGCCCCATCCTTTCCAACATTGAACAAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAGAAGCAGCGGAAGGAGGCCTCTCGTCTTCAGACAGTGAATAGAAAGCTGTCTGCAATGAACAAGTTGTTAATGGAAGAAAATGATCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATACATGAAACAACAAATACACACTGCATCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAGAACCAACAGCAAAACCCAAAAACTCAGCCTCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTCTTGCAATTGCTCAAGAGACCCTGGCAGCGTTCCTTTCCAAAGCTACTGGAACTGCTATCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGCAGTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCGGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTAAGCGTAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCCACAACCTTGGCAGCTGCAAGAGACTTCTGGACACTAAGATACACTACAACTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCTTTGACTCCTTCAACTGGTGGCCCCGTTGGGCCTCCTGCTTTAAACTTTGTGAGAGCTGAAGTCCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATGGATCTGGATGTTTGGAGTGTTCCTGAAGTACTAAGGCCCCTCTATGAATCTTCAAAATTATTGGCTCAGAAATTGACTACTGCTGCCTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGTCGTCAACCTGCTGTCTTGAGAACATTTAGTCAAAGGCTTTGCAAAGGGTTCAATGATGCTGTCAATGGGTTTGGGGATGATGGTTGGTCGCTGATTGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCAAACAAGTTTTATGGTTCACATTACAATACATCAATGCTTCCAACATTTGGTGGTGGGGTTCTGTGCGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTGGTTCGATTTTTGAGGGAACATCGTTCTGAGTGGGCTGATTATGGGGTTGATGCATATTCTGCTGCTTGTCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTGGTTTCCCAAGCAGCCAGGTCATTTTACCACTTGCTCATACTATTGAGCATGAGGAGTTTCTGGAGGTAGTTCGTATTGAGGGTAATGCATTCCCCCCTGATGATGTAGCTTTAGCATGTGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGCGCACAGCTTGTGTTTGCACCTATCGATGAATCTTTTGCAGATGATGCTCTGTTACTGCCTTCTGGTTTCCGCATCATACCATTAGATCCTAAAACGGATGGTCCAGCTTCAACTAGGACATTGGATTTGGCATCAGCACTGGACATAGGATCTGGTAATGCCCGTCCTGCTGGTGAAAGTGATATGAGTAACTACAACCTTAGGTCAGTCCTCACAATTGCATTCCAGTTTACTTTTGAGAACCATTTGCGGGACAACGTGGCCGTTATGGCTCGCCAATATGTGCGCAATGTTGTGCGATCAGTTCAGAGGGTTGCCATGGCAATTGCACCCTCTCGGCTCAGTACTACAGAGTTAGGACCAAAGTCACTTACTGGTCCACCAGAGGCTCTTACCCTGGCAAGATGGATCTGCAGAAGCTACAGGCTGCACACCTGCACAGAGCTTTTTAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAGTATTATGTTGTTCTGTAAAAACTAATGCATCTCCTGTATTCACCTTTGCAAACCAAGCTGGACTTGATATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAATCTGGCAGGAAGGTTCTCTGCATTGAGTTCTCCAAGATAATGCAACAGGGGTTTGCATATCTTCCAGCAGGAATATGTGTATCAAGTATGAATCGACCAGTGTCCTATGAGCAGGCCATAGCATGCAAAGTTCTGGATGATGATGATTCCAATCACTGCCTTGCATTTGTGTTCATGAACTGGTCTTTTGTCTAA 2544 0.4595 MALCMQRDSVLNRLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRECPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASATTTDNSCESVVVSGQNQQQNPKTQPPQWDANNPAGLLAIAQETLAAFLSKATGTAINWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLTPSTGGPVGPPALNFVRAEVLPSGYLIRSCEGGGSIIHIVDHMDLDVWSVPEVLRPLYESSKLLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFGDDGWSLIGNDGVEDVTIAINSSPNKFYGSHYNTSMLPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPSGFPSSQVILPLAHTIEHEEFLEVVRIEGNAFPPDDVALACDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGPASTRTLDLASALDIGSGNARPAGESDMSNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTTELGPKSLTGPPEALTLARWICRSYRLHTCTELFRVESTSGDAILKQLWHHSDAVLCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKVLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIACKVLDDDDSNHCLAFVFMNWSFV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02810 847 SMART HOX_1 16 82 IPR001356 GO:0003677
Phco4g02810 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 847 IPR044830 GO:0003700
Phco4g02810 847 CDD homeodomain 19 79 IPR001356 GO:0003677
Phco4g02810 847 SMART START_1 166 376 IPR002913 GO:0008289
Phco4g02810 847 MobiDBLite consensus disorder prediction 138 159 - -
Phco4g02810 847 CDD bZIP 71 110 - -
Phco4g02810 847 Gene3D - 201 382 IPR023393 -
Phco4g02810 847 Pfam Homeodomain 20 77 IPR001356 GO:0003677
Phco4g02810 847 Pfam MEKHLA domain 702 846 IPR013978 -
Phco4g02810 847 Gene3D - 15 85 - -
Phco4g02810 847 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Phco4g02810 847 MobiDBLite consensus disorder prediction 138 158 - -
Phco4g02810 847 FunFam Homeobox-leucine zipper protein REVOLUTA 19 74 - -
Phco4g02810 847 ProSiteProfiles 'Homeobox' domain profile. 22 78 IPR001356 GO:0003677
Phco4g02810 847 SUPERFAMILY Bet v1-like 167 378 - -
Phco4g02810 847 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Phco4g02810 847 Coils Coil 84 108 - -
Phco4g02810 847 Pfam START domain 167 375 IPR002913 GO:0008289
Phco4g02810 847 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02810 Phco-Chr4 49391698 49397433 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g02810 START 5.6e-49 CL0209