Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02808 ATGTCTTCTGGGTGCTCTGTAACTACCCCAACTGCTATTTTCTCACTCTCGCCGGTTTTGCTTGCAATTTTGGAATTCTTTGGTCGATTGGTTTGGGGGAATTCTCTTGTTTTGCATGTACATCCATCTCTGCTATGTGCTTTTGTCTCTCTTTGTTCTGGCTTTATGGTTTGGACAGTGTTACGCCCTTCTCGAAACATGACCTCTGCTCACAACCTTACTGATAATGAAGATGATGGGCAGCACCAGTCAGAATCCCAAGTGCAGTCCCCATCTGCAAATGGAATTTCTGATTCTGGTATTAGTACCCAGAATGTCAATGTACAGTATGCAACACCTGGCCTGCTTGGAGCTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTATTACAGAAGCATCTTTGCTCCCTATGATACTCAACCTTATCCCCCACAAGCCTATAGTGGACAGCCAATGGTTCATCTTCAGTTAATGGGAATTCAGCAAGCTGGCGTTCCTCTGCCAACTGATGCAGTAGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGAAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCGAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAATGAGCATAATGATGTGGCATCAGCTGAGAAATCACAATCCAATATCAATCTCAATTCTGATAAAAATGATCAAACGTCATCAGATAGGACATCCTGA 819 0.4347 MSSGCSVTTPTAIFSLSPVLLAILEFFGRLVWGNSLVLHVHPSLLCAFVSLCSGFMVWTVLRPSRNMTSAHNLTDNEDDGQHQSESQVQSPSANGISDSGISTQNVNVQYATPGLLGAGHAMVPPVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENEHNDVASAEKSQSNINLNSDKNDQTSSDRTS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02808 272 MobiDBLite consensus disorder prediction 232 247 - -
Phco4g02808 272 MobiDBLite consensus disorder prediction 83 98 - -
Phco4g02808 272 ProSiteProfiles NF-YA/HAP2 family profile. 176 236 IPR001289 GO:0003700|GO:0006355
Phco4g02808 272 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 178 233 IPR001289 GO:0003700|GO:0006355
Phco4g02808 272 MobiDBLite consensus disorder prediction 248 266 - -
Phco4g02808 272 SMART cbf3 175 236 IPR001289 GO:0003700|GO:0006355
Phco4g02808 272 PRINTS CCAAT-binding transcription factor subunit B signature 179 201 IPR001289 GO:0003700|GO:0006355
Phco4g02808 272 PRINTS CCAAT-binding transcription factor subunit B signature 210 233 IPR001289 GO:0003700|GO:0006355
Phco4g02808 272 MobiDBLite consensus disorder prediction 195 272 - -
Phco4g02808 272 MobiDBLite consensus disorder prediction 195 213 - -
Phco4g02808 272 Gene3D - 176 237 - -
Phco4g02808 272 MobiDBLite consensus disorder prediction 69 98 - -
Phco4g02808 272 ProSitePatterns NF-YA/HAP2 subunit signature. 181 201 IPR018362 GO:0003677|GO:0016602
Phco4g02808 272 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 70 270 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02808 Phco-Chr4 49364203 49368854 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco4g02808 CBFB_NFYA 5e-26 No_clan