Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02770 ATGATGATGTTTTACTTGATCCAGCTTCCAGCCATGGCTTTTCCAAACCAATCCATGTCATCAGTTTCTCCCGAGAGAAAGACGGGAAGGGGAAAGATTGAGATCAAGAGGATCGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTCCTTTGTGATGCAGAGGTTGCTCTAATAGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAGTGGTGGATCTGCTTCGGAGGCTAATGCTCAGTTCTACCAGCAGGAAGCTGCCAAACTGCGAGTTCAAATTAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCAATATGAATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATCAGCAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAGAAGAGGGAGACAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATGGCAGAAAGGGAAAGGAGTGAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCCAATAGTAACCAATATGCTGGACAAGACCACATGTCCCTCCAATTTGTGTAA 762 0.4291 MMMFYLIQLPAMAFPNQSMSSVSPERKTGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSNMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKMAERERSEHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNSNQYAGQDHMSLQFV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02770 253 ProSitePatterns MADS-box domain signature. 30 84 IPR002100 GO:0003677|GO:0046983
Phco4g02770 253 Pfam K-box region 111 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g02770 253 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g02770 253 CDD MADS_MEF2_like 29 98 IPR033896 GO:0000977|GO:0045944
Phco4g02770 253 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Phco4g02770 253 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Phco4g02770 253 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Phco4g02770 253 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Phco4g02770 253 FunFam agamous-like MADS-box protein AGL11 40 123 - -
Phco4g02770 253 Gene3D - 40 107 IPR036879 GO:0003677|GO:0046983
Phco4g02770 253 SUPERFAMILY SRF-like 29 101 IPR036879 GO:0003677|GO:0046983
Phco4g02770 253 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Phco4g02770 253 Coils Coil 151 171 - -
Phco4g02770 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 204 - -
Phco4g02770 253 Coils Coil 114 141 - -
Phco4g02770 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 84 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02770 Phco-Chr4 49065299 49071257 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco4g02770 K-box 3.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02770 4 49065299 49071257 Phco4g02770 4 49065299 49071257 ECH
Phco4g02770 4 49065299 49071257 Phco11g00593 11 4140057 4147498 PCT