Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02757 ATGGATGAGGCACTGGGTAGTTCCTGTTCCCTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGAATTCAATTGTTTCGTGGAGTGTCTCTAGCAAAAGTTTCATTGTGTGGAATCCTCCAGAATTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTCAACACATATGGATTTAAGAAAATTGACCCGGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAACATTCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCTAGCACAGGGCCCATTAGGGGAATCGGAAAGGCAGGGTTTTACTGATGAAATAGAGAGGCTTAAACATGATAAAGAGCGACTTCTAGTCGAGTTGCAGAAATTTCAGCATGAGTGGCAGACATATGAGATCCAAATACATTGCTCGAACGATAGGTTGGAAAAGTTGGAACAAAAACAACACAAGATGGTTTCTTCGGTTTCTCATGTATTGCAGAAACCTGTGATTGCTGTAAATATCTTGCCTCTGACAGAAACTATGGATAGAAAACGAAGGTTACCGAGAAGTGGCCACTACTATGATGAAGCTAGTATTGAAGATGCTATTGAAACTTCTCAAATGTTACCAAGAGAAAATGCAGAGAATACCACTGTCTTGACATTAAATGTGGAGCGATTGGATCAGCTTGAATCATCCGTGGCATTTTGGGAGGCTATTGCACATGATATTGGCGACAACTTCGCTCAAATTCAGTCCAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCATCCATATCTTGTGCGCAATTAGATGTTGAAGTTCGGCCTAAATCATCTGGAATTGACATGAACTCTGAACCAACTGCAGCTGCTGTTCCTGATCCACTTGCATCAAAAGATCAACCTGCAGGAATCACTGTCGCAGCGACTGGAGTTAATGATGTATTTTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTGTGATGGCAGAAAAAATGAAGGAAAACCTAATGACCATAGCAAATTTTGGTGGAATATACGGAATGCAAATAATCTTTCAGAACCGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1209 0.4177 MDEALGSSCSLPPFLAKTYEMVDDPSTNSIVSWSVSSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLLAQGPLGESERQGFTDEIERLKHDKERLLVELQKFQHEWQTYEIQIHCSNDRLEKLEQKQHKMVSSVSHVLQKPVIAVNILPLTETMDRKRRLPRSGHYYDEASIEDAIETSQMLPRENAENTTVLTLNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDFDESTSCADSPSISCAQLDVEVRPKSSGIDMNSEPTAAAVPDPLASKDQPAGITVAATGVNDVFWEQFLTEDPGASETQEVQSERKDCDGRKNEGKPNDHSKFWWNIRNANNLSEPMGHVGQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02757 402 FunFam Heat shock transcription factor 1 7 104 - -
Phco4g02757 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02757 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02757 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02757 402 MobiDBLite consensus disorder prediction 347 379 - -
Phco4g02757 402 MobiDBLite consensus disorder prediction 354 377 - -
Phco4g02757 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02757 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02757 402 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Phco4g02757 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02757 402 Gene3D - 7 104 IPR036388 -
Phco4g02757 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 222 IPR027725 -
Phco4g02757 402 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02757 Phco-Chr4 48938349 48939685 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g02757 HSF_DNA-bind 3.7e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02757 4 48938349 48939685 Phco4g02757 4 48938349 48939685 ECH
Phco11g00570 11 3946736 3948035 Phco4g02757 4 48938349 48939685 ECH
Phco4g02757 4 48938349 48939685 Phco11g00570 11 3946736 3948035 PCT