Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02756 ATGAAGTGGGGTGGAAAAAAACCTTCTCCTTCTTCCTCTTCCTCTTCCTCTTCTAGGCCTTCTTTCATATCTCATGTGTCTCCTTTTTCGTGGCTTTCCAAGTTCAAGCATATGAGAATAAACTCAGAGCCAAAACCTGGCGCACTGAAGCAAAATGCAAAGCAGAATTCAACTCCATCAGAGAGCTCACCCTATTATTCTTGTGGGAATAATAGAGGCAGGTTTTATGGAGGGGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGCAATGAGCTTAGAAAAAGTGATGATCTTCTGAAGCCACTAAAGTACAAATTGGATGCTGAACATGTCATTTCATCCTCAAGTTTCCCCGGTGGATTGAATAATGCTAAAAGACAAGGTAGAAGAGAAGCCACTCAGAAGTCGAAGCAGAAGGACACTGGACTGAGAGAAGAAACAACATTGCTGAATGAAGCAGCAAGGAGTGTAAAGGAACTTGAATCCTTGAGGAGGAGATATGAGAGAAAAGCACAAAGAGTTTTGCAAGAGCAGCTCTTGAAATTGGAAAAGGCAGAAGAGGAAGCTGAGTTTGCATCAAGTCCATTCTTAGAAAATTATGTGCTGCAATACGAGTCACCAAGAACAATTTGTACACCAAGGAAGCATTTGTTTGCGGATTCGAAGAGTTCTGGCCCTGGAAATCTCAGAGAAGCTCGAGTGTGTAGTCCCCAATTGGATTCTGAGTGGCATAATTTGAAACAAACTGAGGAGTTGAAGTTGAAAGCAAAGAGTAACCAACAAATGCAATCGCTTCATGTGAGCAGAGAAAACCAGAGGAGGAAACCAAAGTACAACTCCAAGGCTAGAGTATATTCTCCAAGGATGGGTTCCAAGGTTGAAGTCCGCAAAATAAAGGCTATAGAAGAGAAGAAGAAAGCAAAACTGAAGATGAAGAAAGAAGAGGAAATTGTGGAGGAAACAGAAGGGTTAGATAGCTTTGCGGTGGTGAAATGTTCTTTGGATCCCCAGAAAGATTTCAGAGATTCAATGATTGAGATGATCACGGAGAAACAGATCAGCCAGCCAGAAGAAATGCAAGATCTGCTAGCATGTTATCTGACTTTGAATTCTAATGAGTACCATGATCTAATCATCCAAGTGTTCAAGCAAGTATGGTTGTGCATGAGCCAAGCGAGTTCGGGTATTTAA 1200 0.4192 MKWGGKKPSPSSSSSSSSRPSFISHVSPFSWLSKFKHMRINSEPKPGALKQNAKQNSTPSESSPYYSCGNNRGRFYGGDDEAFWRLSFGEEGNELRKSDDLLKPLKYKLDAEHVISSSSFPGGLNNAKRQGRREATQKSKQKDTGLREETTLLNEAARSVKELESLRRRYERKAQRVLQEQLLKLEKAEEEAEFASSPFLENYVLQYESPRTICTPRKHLFADSKSSGPGNLREARVCSPQLDSEWHNLKQTEELKLKAKSNQQMQSLHVSRENQRRKPKYNSKARVYSPRMGSKVEVRKIKAIEEKKKAKLKMKKEEEIVEETEGLDSFAVVKCSLDPQKDFRDSMIEMITEKQISQPEEMQDLLACYLTLNSNEYHDLIIQVFKQVWLCMSQASSGI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02756 399 Coils Coil 146 191 - -
Phco4g02756 399 MobiDBLite consensus disorder prediction 42 71 - -
Phco4g02756 399 ProSiteProfiles OVATE domain profile. 332 391 IPR006458 -
Phco4g02756 399 Pfam Transcriptional repressor, ovate 336 392 IPR006458 -
Phco4g02756 399 MobiDBLite consensus disorder prediction 131 146 - -
Phco4g02756 399 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 180 393 IPR038933 GO:0045892
Phco4g02756 399 MobiDBLite consensus disorder prediction 7 23 - -
Phco4g02756 399 MobiDBLite consensus disorder prediction 1 23 - -
Phco4g02756 399 MobiDBLite consensus disorder prediction 48 69 - -
Phco4g02756 399 MobiDBLite consensus disorder prediction 259 285 - -
Phco4g02756 399 MobiDBLite consensus disorder prediction 118 146 - -
Phco4g02756 399 NCBIfam uncharacterized plant-specific domain TIGR01568 331 392 IPR006458 -
Phco4g02756 399 Coils Coil 300 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02756 Phco-Chr4 48930251 48931450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Phco4g02756 Ovate 1.3e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02756 4 48930251 48931450 Phco4g02756 4 48930251 48931450 ECH
Phco4g02756 4 48930251 48931450 Phco11g00569 11 3939676 3940890 PCT