LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g02730	ATGTCAGACCATAGCCAGAACAAGATGTCCACTTCTGTTGTCAATGTGAATGACTCCCTGACTGGTCACATCATATCCACTACAGTAGGAGGAAAAAATGGGAAGCCCAAACAGACTAGAAGTTATCTGGCAGAACGCATTGTGGGGGCTGGGTCATTTGGAATTGTCTTCCTGGCTAAGTGCGTGGAAACTGGGGAGCTAGTGGCCATTAAGAAGGTTTTACAAGACAGAAGATGTAAGAATCGTGAGCTACAGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGCACCGTTTCTTTTCCACTACAAGTGCAGATGAACTATTTCTTAATTTGGTGATGGAATATGTTCCAGACTCTATGTACCGAGTCTCAAAGTTGTATACTAATACTAATCAGAGCATGCCACTTATCTTTGTGAAACTTTACATGCACCAGATTTTCCGGGGTCTGGCTTATATCCACACTGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCATACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGATTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTATTATTTGGTGCCACAGAGTATACCACTTCAATTGATATTTGGTCAGCTGGCTGCGTCCTTGCTGAACTGCTTTTGGGCGAGCCATTATTTCCAGGCGATAATGCAGTGGACCAACTTGTAGGGATTATCAAGGTTCTTGGCACACCCTCTGAAGAGGAAGTTTGCTGTTCAAATTCGAACAACAACGATTTCAACTTTTCACAGATATTCCGCAAAACAATGCCTCCAGAAGCAATTGATCTTACTTCCCGGCTTCTGCAGTATTCCCCAAAACTTCGTTGTACTGCGCTAGAAGCATGTGCACATCCATTCTTTGATGAACTCCGTGAACCCAATGCTCTCTTGCCAGATGGTCGGCCATTTCCCCCTCTATTCAACTTTAAACAAGAGCTATCCGGAGCGTCTCAAGAGCTTATTGATAAGTTGATACCTGAACATGTGAAGCGGAAGATTGGGCTACAACCTACCCATTTTGGTGGAACATGA	1125	0.4338	MSDHSQNKMSTSVVNVNDSLTGHIISTTVGGKNGKPKQTRSYLAERIVGAGSFGIVFLAKCVETGELVAIKKVLQDRRCKNRELQLMRMMDHPNVISLKHRFFSTTSADELFLNLVMEYVPDSMYRVSKLYTNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPHTHQVKICDFGSAKVLIKGEANLSHICSLFYRAPELLFGATEYTTSIDIWSAGCVLAELLLGEPLFPGDNAVDQLVGIIKVLGTPSEEEVCCSNSNNNDFNFSQIFRKTMPPEAIDLTSRLLQYSPKLRCTALEACAHPFFDELREPNALLPDGRPFPPLFNFKQELSGASQELIDKLIPEHVKRKIGLQPTHFGGT	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g02730	374	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	163	175	IPR008271	GO:0004672\|GO:0006468
	Phco4g02730	374	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	6	362	-	-
	Phco4g02730	374	Pfam	Protein kinase domain	44	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco4g02730	374	FunFam	Shaggy-related protein kinase kappa	122	361	-	-
	Phco4g02730	374	ProSitePatterns	Protein kinases ATP-binding region signature.	48	72	IPR017441	GO:0005524
	Phco4g02730	374	Gene3D	Phosphorylase Kinase; domain 1	27	121	-	-
	Phco4g02730	374	CDD	STKc_GSK3	37	321	IPR039192	-
	Phco4g02730	374	SUPERFAMILY	Protein kinase-like (PK-like)	37	342	IPR011009	-
	Phco4g02730	374	Gene3D	Transferase(Phosphotransferase) domain 1	122	361	-	-
	Phco4g02730	374	SMART	serkin_6	42	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco4g02730	374	FunFam	Glycogen synthase kinase-3 beta	26	121	-	-
	Phco4g02730	374	ProSiteProfiles	Protein kinase domain profile.	42	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g02730	Phco-Chr4	48688080	48694261	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Phco4g02730		Pkinase	6.1e-63	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco11g00539	11	3729182	3733130	Phco4g02730	4	48688080	48694261	PCT