Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02728 ATGAAGCCCTTTTGCAGATTCTTGATTCTCTTATCGCTATTTTCTCTGGTGGAATCTTCATGCAACAGTGAAGATGAACACGTCTTGGTGTCGAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTACTCCTGGTTCCAAACCAACTGTTCACAAGCTCACATCACCAGTATAGTACTTCCATCCCAAAACCTTACTGGCACAATCTCCTGGGGTTACCTGAGGAACTTGTCCAACCTGCAGGTTCTCGACCTCTCAGGAAATTCCTTACAAGGCCACGTGCCAAGCTGGTTTTGGTCAACTTCATCCTTATTGGAAATAAACCTCTCCAGAAACAGGTTTGGAGGGAGCATCATTATCCCCTCCTCCAAACCCATACCACAAAATACCTCGTTTTCAATTTCATCCATTCAAACGCTCAATCTCTCCCACAACAGGTTCACCAACTCAATCCAACTTTCTGCCTTCCACAACATTAAAATCCTCGACCTTTCCAACAACAACCTGCGAACACTTCCCTCCGGGCTCCAAAACCTCTCCAAGCTTGTACACCTCGATCTCTCAAACTGTAATCTCAAAACCAACGTAAAACCAGTTTCCTCTCTTCATTCACTTCGCTACTTGGACTTATCAAACAACACCTTCGCGGGAAATTTCCCTTTGGATTTCCCTCCACTCTCCACCCTCGAATTCCTGAACATCTCCTACAACAACTTCACCTCATCAACTAGCCTAACCAAGTTCAACAGTTTCGGTAAATCAGCTTTTGTCCACGCTGGCAACAATTTCACCTACGACAACACCGCGTCCAAAACGACCAGCAGCAGTAAAAAATCAGCGCAAGCCACCCACAAGAAACAAGGGAAGAGAAAATCCAAAGCGCTGATTGCTGCAGCCTCGTCAGAAGGATCGGCCCTTGTCCTAATTCTGTTGTCCATTTGGGTACTCCGCATTATTATTCGGAAGAGGAAGCAACGCGCCAAGAGGAGCAAGTGGGCGATTTCCATGCCGGTCCCACATGGGATGAACGTGGTGACTAGCAGGGCGGAGAAATCAGGGCCGTTCGCGTTTGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCTGCGCCGGTGGTGATGTTCGAGAAGCCGTTGATGAACCTTAGCTTCAAGGACCTCATTGTTGCAACCTCACACTTCGGTAAAGACTCGCTGCTCGCGGAGGGAAGGTGTGGGCCCGTTTACAGAGCCGTGCTGCCGGGGGACCTCCACGTGGCAATCAAGGTCCTGGAACACGCTAGAGACGTTGATCCTGATGACTCGGTCGCCACGTTCGTTGACCTCTCAAGACTCAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCTGGTAAGGAGAAACTGGTACTGTACGAGTACATGGCGAACGGCGACCTAGGAAGGTGGCTACACGAGCTTCCAACTGGGGATACCAACGTGGAGGACTGGACAAGCGACACGTGGGAGATTCAAAACGTCGTCGTCGACGATGGATCCCCAGAAAAGATGGGTTGGCTGACACGACACCGTATCGCGGTTGGGATAGCGCGTGGTCTCGCTTACCTGCACCACGCGCGTTCGAAGCCCGTGGTACACGGCCACCTCGTCACCTCCAACATTCTACTCGCCGACGATTTCGAGCCCCGGATCTCGGATTTCGGGTTGCGACCCGACCCGAACCCGAACGGCGGCATTGAGGCCGACGTGTACTGCTTCGGGGCGGCGCTGATGGAGCTCCTAACTGGGAAGGAAAGCACGGCGGAGACGGTGGCAGCGGCGAGGAAGGCGGTGAGGGAGGGGCACGGCGTTAGGGTTCTGGACGAGAGGCTCCTAATCGGTGGTGACTCGGTAGTGAGTGAGATGGTGGAGAGTCTCCGAGTGGCGTTTTTGTGTACGGCGGAAGACCCTTGGAAGAGGCCAACAATGAGGCAGGTTTTGGGTTTGCTGAAAGACATTCGTCCTCATGAACAGCAACTCGTGATGAGTTGA 2031 0.5229 MKPFCRFLILLSLFSLVESSCNSEDEHVLVSKAFKSVSGFNAYSWFQTNCSQAHITSIVLPSQNLTGTISWGYLRNLSNLQVLDLSGNSLQGHVPSWFWSTSSLLEINLSRNRFGGSIIIPSSKPIPQNTSFSISSIQTLNLSHNRFTNSIQLSAFHNIKILDLSNNNLRTLPSGLQNLSKLVHLDLSNCNLKTNVKPVSSLHSLRYLDLSNNTFAGNFPLDFPPLSTLEFLNISYNNFTSSTSLTKFNSFGKSAFVHAGNNFTYDNTASKTTSSSKKSAQATHKKQGKRKSKALIAAASSEGSALVLILLSIWVLRIIIRKRKQRAKRSKWAISMPVPHGMNVVTSRAEKSGPFAFETESGSTWVADLKEPSSAPVVMFEKPLMNLSFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTSDTWEIQNVVVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADDFEPRISDFGLRPDPNPNGGIEADVYCFGAALMELLTGKESTAETVAAARKAVREGHGVRVLDERLLIGGDSVVSEMVESLRVAFLCTAEDPWKRPTMRQVLGLLKDIRPHEQQLVMS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02728 676 SMART LRR_typ_2 179 203 IPR003591 -
Phco4g02728 676 SMART LRR_typ_2 77 100 IPR003591 -
Phco4g02728 676 SMART LRR_typ_2 156 178 IPR003591 -
Phco4g02728 676 Gene3D Ribonuclease Inhibitor 15 124 IPR032675 -
Phco4g02728 676 Gene3D Ribonuclease Inhibitor 125 299 IPR032675 -
Phco4g02728 676 FunFam Calmodulin-binding receptor kinase CaMRLK 135 245 - -
Phco4g02728 676 SUPERFAMILY L domain-like 43 242 - -
Phco4g02728 676 ProSiteProfiles Protein kinase domain profile. 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02728 676 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Phco4g02728 676 SUPERFAMILY Protein kinase-like (PK-like) 376 667 IPR011009 -
Phco4g02728 676 Gene3D Transferase(Phosphotransferase) domain 1 576 675 - -
Phco4g02728 676 Pfam Leucine rich repeat 136 192 IPR001611 GO:0005515
Phco4g02728 676 Pfam Leucine rich repeat 54 114 IPR001611 GO:0005515
Phco4g02728 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 581 667 - -
Phco4g02728 676 FunFam Putative LRR receptor-like serine/threonine-protein kinase 360 474 - -
Phco4g02728 676 Pfam Protein tyrosine and serine/threonine kinase 403 571 IPR001245 GO:0004672|GO:0006468
Phco4g02728 676 MobiDBLite consensus disorder prediction 268 287 - -
Phco4g02728 676 Gene3D Transferase(Phosphotransferase) domain 1 475 575 - -
Phco4g02728 676 Gene3D Phosphorylase Kinase; domain 1 359 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02728 Phco-Chr4 48654335 48657047 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Phco4g02728 PK_Tyr_Ser-Thr 9.7e-21 CL0016