Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02725 ATGTCAGATGAATATGAGATGAGTGATGAACAGGTTGATGACAGTTCAATGGGATCATCCCAAAAGTGCTCATCCTTTGATTTGAATGAAGAAGCTAGTAGTGAAAATAATAGCAATGCTAATGATAAGATATATGAGGAAGCTAAGGATGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAATGAACGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTAGACTTCGTTGGACACCTGAACTTCATCTTTCTTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTAAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTATCGGAGCAAGAAACTCGATGAGGCCGGGCAAGTATTAAGCGAAACATACAAATCAACCCATGAACTTGGTCGTATTTCTCATATGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACAGCGAGCATAGTTATTTCCATGGTCTCTTGCATCCTTCAACCCTAGCACATTCAAAAGCCATCGACTCAAGGCACCAAAAATGGTACTTCAACAATCATCAACCTTTTAGAAAACCAAGTTACTCTAGCAACGAAGTTGCCTCAGCAGCCTTACAAAAGCAAGGAAGATCAATGTCTTCAAACCAAATTCAACAAATGGATGCTACCAGCATTGTACCCATGAGACCAAGCCAGTTTCTTGAAGAGAAAAGATGGCCTCCATTAGAAATTATGAACAATCACCCCTGGAAGAAAAGGTTACCTGCCAACATTACTTCTAATACTGAGTCACAATCTGTGTTACTCCATCAATTTGGCACCACTACTCCAGCATCTCTTAGACCAAGTGACTTGAACTTCGCAAACAAAACAAGAATCAGGGAACATATAACTAACTCTGATGAGCATCGCAGCTATTCGAACAGTTCCAAGCTAGAATTTGAACCTCCATTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAAAGAGAAGCAGTGGATGCCTGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAATGATGAGAAGACGGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCCTAG 1188 0.4032 MSDEYEMSDEQVDDSSMGSSQKCSSFDLNEEASSENNSNANDKIYEEAKDEGTSTNKSSSITREGNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSETYKSTHELGRISHMTHPRQHFKMGNGGIILASDYSEHSYFHGLLHPSTLAHSKAIDSRHQKWYFNNHQPFRKPSYSSNEVASAALQKQGRSMSSNQIQQMDATSIVPMRPSQFLEEKRWPPLEIMNNHPWKKRLPANITSNTESQSVLLHQFGTTTPASLRPSDLNFANKTRIREHITNSDEHRSYSNSSKLEFEPPFRIKSNQEKMQKEKQWMPDLRLSLSQRDGNNDEKTDHCRETQEINTKLSLS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02725 395 MobiDBLite consensus disorder prediction 346 395 - -
Phco4g02725 395 MobiDBLite consensus disorder prediction 370 387 - -
Phco4g02725 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Phco4g02725 395 MobiDBLite consensus disorder prediction 12 41 - -
Phco4g02725 395 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Phco4g02725 395 FunFam Myb family transcription factor 80 138 - -
Phco4g02725 395 Gene3D - 81 138 - -
Phco4g02725 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 54 246 IPR046955 GO:0003700
Phco4g02725 395 MobiDBLite consensus disorder prediction 346 360 - -
Phco4g02725 395 MobiDBLite consensus disorder prediction 1 76 - -
Phco4g02725 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Phco4g02725 395 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02725 Phco-Chr4 48621658 48627753 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco4g02725 Myb_DNA-binding 2.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02725 4 48621658 48627753 Phco4g02725 4 48621658 48627753 ECH
Phco11g00529 11 3639331 3641890 Phco4g02725 4 48621658 48627753 ECH
Phco4g02725 4 48621658 48627753 Phco11g00529 11 3639331 3641890 PCT