Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02721 ATGAACGTCATGGCAGAGCTCAGTCCGAAAAAGGAAAACCCGAACCTTCTGCTGGGCCGGTTCGAGCTGGGAAAACTCCTGGGGCACGGAACCTTCGCCAAGGTTCACCACGCCAGGAACATCAAAACCGGGGAAGGAGTGGCCATCAAGATCATAAACAAGGAAAAGATCCTCAAGGGCGGTTTGGTGTCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGCGTCCGTCACCCCAACATCGTCCAACTCTTCGAAGTCATGGCCACCAAAACCAAGATCTACTTCGTCATGGAGTTCGTACGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGAAGGTTGAAGGAAGAAGTTGCCAGAAAGTACTTCCAGCAGCTGGTTTCCGCGGTGGAATTCTGCCACGCACGAGGGGTATTCCACAGGGACATCAAGCCCGAGAATTTGTTGCTGGATGAGGATGGGAACCTTAAAGTCTCCGACTTCGGACTCAGTGCTGTGTCGGATCAGATTAGGCAGGATGGGCTGTTCCACACGTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTTTTGGCGCGGAAAGGGTACGATGGTGCCAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCGGGTTATTTGCCTTTCCATGACCATAATGTTATGGCCATGTATAAGAAGATTTACAGGGGTGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGAACTTGCTAGACTTCTCTCTAGGCTTCTTGATACCAACCCTCAGACCAGGATTTCTATTCCTGAAATCATGGAGAATCGCTGGTTCAAGAAGGGTTTCAAGCAAATAAAGTTCTATGTGGAGGATGATGGAGTTTGTAGCTTTGATGATAAGTTGCAGTTGCATCCCCATGATGGAGGTGGGGATGATGATTTGGCAACATCGGATTCCGAGGTTGAAATTAGGAGGAAGAATAGTCATCATGCTTCCTTGCCAAGGCCTGCTAGTTTGAATGCATTTGACATCATATCGTTTTCTCAGGGCTTTGATCTCTCTGGGTTGTTTGAGGAAAAGGGGGATGAGGCCAGGTTTGTGTCTTCTGCTCCGGTGTCTAAGATTATATCCAAATTGGAGGAGGTTGCTCAGTTGGTTAGCTTCACGGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGCTCTAGAGAAGGCGTGAAGGGGCCTTTGACCATTGCTGCTGAGATTTTTGAGTTGACACCTTCCTTGGTGGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAAGGCAGAGTATGACAAGTTTTGTAACTCTGAGTTGAGACCCGCGTTGGAGAATTTGGCAATGGAGGAATCTGCTTCTTCGTCCTACCAATCTACACACCTTGAATCTGAATTGCATCAACGAACACTCTCTGACTCAGCCCTTAACATTCATTCAGATAGTGAAAGCTTGTACCAACAAAACTTGGCTGAAGTAGAAAAAACTAGCATCCGAAAACATGGTGAATCAATATTCGAAATCTCATAG 1539 0.4821 MNVMAELSPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEFVRGGELFNKVAKGRLKEEVARKYFQQLVSAVEFCHARGVFHRDIKPENLLLDEDGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDHNVMAMYKKIYRGEFRCPRWFSPELARLLSRLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDGVCSFDDKLQLHPHDGGGDDDLATSDSEVEIRRKNSHHASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPVSKIISKLEEVAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYDKFCNSELRPALENLAMEESASSSYQSTHLESELHQRTLSDSALNIHSDSESLYQQNLAEVEKTSIRKHGESIFEIS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02721 512 Gene3D Kinase associated domain 1, KA1 331 452 - -
Phco4g02721 512 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02721 512 CDD STKc_SnRK3 20 274 - -
Phco4g02721 512 FunFam Non-specific serine/threonine protein kinase 11 325 - -
Phco4g02721 512 ProSiteProfiles NAF domain profile. 331 355 IPR018451 GO:0007165
Phco4g02721 512 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Phco4g02721 512 SUPERFAMILY Protein kinase-like (PK-like) 17 276 IPR011009 -
Phco4g02721 512 Gene3D Transferase(Phosphotransferase) domain 1 11 327 - -
Phco4g02721 512 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 447 - -
Phco4g02721 512 FunFam Non-specific serine/threonine protein kinase 333 451 - -
Phco4g02721 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Phco4g02721 512 CDD CIPK_C 337 447 - -
Phco4g02721 512 Pfam NAF domain 333 389 IPR004041 GO:0007165
Phco4g02721 512 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02721 512 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Phco4g02721 512 Pfam Protein kinase domain 22 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02721 Phco-Chr4 48583810 48585348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco4g02721 Pkinase 9.9e-75 CL0016