Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02663 ATGGTCAAAGTGTGGAGTCTCAATCCCTCTCACACAAGTGTCTCCTGGTGGTGCCAACTCAGCAGAGTAGCAGTCATTCACTTCACTCTCACTTCCAACACTCACCACACCACTCTGTGTCGGAGAGGCAAGGCAAGAATGACCCAACCACTCCCCATCGTCGCTTGCGTTCTGTTATCGGCAGTAGCGTGGGTGGCGTGTCTGAACCAAGAGGGGCTGTACCTGTACCAACTCAAGCTCTCTCTTGACGACCCTTACTCCACTCTTTCCTCCTGGAACTCCAGGGACGCCACCCCCTGCAACTGGTATGGGGTAACCTGCGCTGGCGATGCCTCCAACACCACCGTAACAGAATTGGACCTCTCCGACACCAACATCGGAGGCCCTTTCCTCGCCAACATCCTCTGTCGTCTCCCCAACCTCCTCTCCATAAACCTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCGACATCTCCCTGTGCCTCTCTCTCCGCCACCTCGACCTCTCCCAGAACCTCCTCACCGGTCCCCTCCCCGCCACGCTCCCGCTCCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATCCCAGACTCCTTCGGAACTTTCCAGAACCTCCAAGTCCTCTCCCTCGTCTCCAATCTTCTAGAAGGCACCATCCCCCCCTCGTTGGGCAACGTCTCCTCTTTGAAAATGCTTAACCTCTCTTACAACCCCTTCTTCCCCGGTCGAATCCCCCCGGAGCTCGGCAACCTCACCAACCTCGAGGTTCTCTGGCTCACCCAATGCAACCTCGTCGGCGTCATTCCAGCCTCTCTTGGGAACCTCAACAAGCTCCAGGACCTCGACCTCGCGCTCAATGACCTCTACGGCTCCATCCCAAGTTCTCTCACTCAGTTAACCAGCCTCACGCAGATCGAGTTGTACAACAACTCGCTCTCCGGAGAGTTGCCGCGGGGAATGGGGAATCTCACCCGCTTGAGGCTCCTCGACGCCTCCATGAACCACTTAACGGGGAGGATTCCCGACGAGCTTTGTTCTTTGCCGTTGGAGAGTCTCAATTTGTACGAAAACCGTTTCGAGGGAGAGTTACCGGCCAGCATTGCGGATTCCGAGAATCTATATGAGCTTCGGCTATTTGGGAACCGCCTCACCGGCAGGTTACCCGCGAATCTCGGCAAGAATTCGCTGCTCCGGTGGCTTGACGTTTCGAGCAACCAGTTCTGGGGGCCTATTCCGGCGACGCTGTGTGATAAGGGTGCACTTGAGGAGCTTCTGGTGATTTATAATCTTTTCTCCGGGGAGATTCCAGCGAGCTTAGGCACGTGCCAGAGCTTGACTCGTGTGAGACTCGGATTTAACCGGTTGTCCGGCGAGGTTCCCGCCGGGATCTGGGGGCTTCCACGCGTCTATCTTCTCGAGCTTGTCGACAACTCGTTTTCGGGTTCCATAGCCAGGACCATTGCTGGTGCCGGGAACTTGTCGCTGTTGATTCTGTCGAAGAATAACTTCTCGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTGGAGTTTTCCGCCAGTGATAATAAGTTCACAGGCTCGCTTCCGGATAGCATTGTGAATCTTGGGCAGCTTGGGATTCTCGATTTTCATAATAACAGACTCTCCGGGGAGTTGCCGAAAGGGATTCATTCGTGGAAGAAGCTCAACGATTTGAATTTGGCCAACAATGTGATTGGTGGGAAGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAACTTTCTAGATCTTTCTAGTAACCGCTTTTCGGGGAAAGTCCCTCACGGGTTGCAGAATCTTAAGCTGAATCAGCTTAATTTGTCTTATAATCGTTTGACTGGTGAACTTCCTCCTCTGTTGGCTAAGGTTATGTATAGGTCTAGTTTCCTCGGTAATCCTGGCTTGTGTGGGGATTTGAAGGGGTTGTGTGATGGTAGGGGTGAGGCAAAGAGTGTAGGTTATGTTTGGCTGCTTCGAGCTATTTTTGTGGTAGCCACTTTGGTTTTCCTTGTTGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGACGCCAAGAGGGCGATTGATAAGTCTAAGTGGACGTTAATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAATTGTCTTGATGAGGATAATGTGATTGGAAGTGGTTCCTCGGGGAAGGTTTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTAGAGAGTGGGGATGTCGAAAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAACATAGTCAAGCTGTGGTGTTGCTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTGCTGCATAGTAGTAAAGGAGGGTTGTTGGATTGGCCAACAAGGTATAAGATAGCTGTGGATGCGGCGGAAGGACTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGACGTGAAATCAAACAATATTTTATTGGATGGGGACTTTGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACCACAGCAAAAGGAACTAAATCCATGTCCGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCTTACACGCTCAGAGTGAATGAGAAGAGCGACATATACAGCTTTGGGGTTGTCATACTCGAGTTGGTTACTGGAAGACGCCCGGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACTACCTTAGACCAGAAAGGCGTGGACCATTTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATTAACAGGCCTTCAATGAGAAGAGTAGTGAAAATGTTGCAAGAGGTGGGCACTGAGAACCAAACCAAGCCTGCAAAGAAAGATGGGAAGCTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGTTTAA 3138 0.5076 MVKVWSLNPSHTSVSWWCQLSRVAVIHFTLTSNTHHTTLCRRGKARMTQPLPIVACVLLSAVAWVACLNQEGLYLYQLKLSLDDPYSTLSSWNSRDATPCNWYGVTCAGDASNTTVTELDLSDTNIGGPFLANILCRLPNLLSINLFNNSINQTLPLDISLCLSLRHLDLSQNLLTGPLPATLPLLPNLRYLDLTGNNFSGPIPDSFGTFQNLQVLSLVSNLLEGTIPPSLGNVSSLKMLNLSYNPFFPGRIPPELGNLTNLEVLWLTQCNLVGVIPASLGNLNKLQDLDLALNDLYGSIPSSLTQLTSLTQIELYNNSLSGELPRGMGNLTRLRLLDASMNHLTGRIPDELCSLPLESLNLYENRFEGELPASIADSENLYELRLFGNRLTGRLPANLGKNSLLRWLDVSSNQFWGPIPATLCDKGALEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPRVYLLELVDNSFSGSIARTIAGAGNLSLLILSKNNFSGTIPDEVGWLENLVEFSASDNKFTGSLPDSIVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLANNVIGGKIPDEIGGLSVLNFLDLSSNRFSGKVPHGLQNLKLNQLNLSYNRLTGELPPLLAKVMYRSSFLGNPGLCGDLKGLCDGRGEAKSVGYVWLLRAIFVVATLVFLVGVVWFYFRYKNFQDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVETTAKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENQTKPAKKDGKLSPYYYDDASDHGSVV 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02663 1045 Gene3D Transferase(Phosphotransferase) domain 1 820 1038 - -
Phco4g02663 1045 FunFam Receptor-like protein kinase HSL1 716 819 - -
Phco4g02663 1045 SUPERFAMILY Protein kinase-like (PK-like) 727 1012 IPR011009 -
Phco4g02663 1045 ProSitePatterns Protein kinases ATP-binding region signature. 738 761 IPR017441 GO:0005524
Phco4g02663 1045 MobiDBLite consensus disorder prediction 1020 1034 - -
Phco4g02663 1045 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 279 1014 - -
Phco4g02663 1045 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Phco4g02663 1045 FunFam Leucine-rich receptor-like protein kinase family protein 252 350 - -
Phco4g02663 1045 SMART serkin_6 732 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02663 1045 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 68 234 - -
Phco4g02663 1045 MobiDBLite consensus disorder prediction 1016 1045 - -
Phco4g02663 1045 Gene3D Ribonuclease Inhibitor 427 661 IPR032675 -
Phco4g02663 1045 SUPERFAMILY RNI-like 118 440 - -
Phco4g02663 1045 Pfam Leucine rich repeat N-terminal domain 69 107 IPR013210 -
Phco4g02663 1045 FunFam Receptor-like protein kinase HSL1 356 663 - -
Phco4g02663 1045 Gene3D Ribonuclease Inhibitor 325 426 IPR032675 -
Phco4g02663 1045 Pfam Leucine Rich Repeat 164 183 IPR001611 GO:0005515
Phco4g02663 1045 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515
Phco4g02663 1045 SMART LRR_typ_2 210 234 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 546 569 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 138 162 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 594 617 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 259 282 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 283 307 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 186 209 IPR003591 -
Phco4g02663 1045 SMART LRR_typ_2 331 355 IPR003591 -
Phco4g02663 1045 Pfam Protein kinase domain 734 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02663 1045 Gene3D Phosphorylase Kinase; domain 1 716 819 - -
Phco4g02663 1045 SUPERFAMILY L domain-like 380 636 - -
Phco4g02663 1045 Gene3D Ribonuclease Inhibitor 225 324 IPR032675 -
Phco4g02663 1045 Gene3D Ribonuclease Inhibitor 70 224 IPR032675 -
Phco4g02663 1045 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 820 1029 - -
Phco4g02663 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 864 876 IPR008271 GO:0004672|GO:0006468
Phco4g02663 1045 ProSiteProfiles Protein kinase domain profile. 732 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02663 Phco-Chr4 47992420 47996068 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco4g02663 Pkinase 4e-42 CL0016