Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02660 ATGGAGGAAGATGGTTATTCGGAGGGAGACAATAATCGGAAAAGGGGTGGCACAGACGATGATAGCAATGAGAATAACAACAACAGCACCAATCACGGAAGTAGTTACAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACTCCTTTTCAACTGGAAACCCTCGAGAAGGCTTATGCAGTGGATAATTACCCGTCGGAGACGATGAGGGGAGAACTTTCTGAGAAATTGGGTTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTGAAGGAAAAGAAGGACTTGACGTCCAAGAAACTGCCACGAAAGGTGGTGGCAGAGCCTTTGCCGGAATCACCTACAGATGACCCCATGTTGGGCCCTCCGGAGCTTGGTAATGAGTATGGATCCGGGTCCGGTTCAGGGTCCAGCCCTTATGCCCGAGTGGAGCCCCTGAACATTGTTCCCCGGGGTGTGCCTGGTTATTACGAGTCCCCACGGGCTATGATGGAGAACAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCGTTGAGGGAAGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGGGCACCTATAGCAGTTACAGAACCGCAGAAGCTACCTACTTTTGCCTATGAAAGTAAAATATATGAAAGACATGATGTTAGAGCCAATAAGGCTATGACAAGGACATTCCGTGACTATCGATCTCTACCAAGCCAGTCTGGCACTAGGTCTGATACTTCTGGACCGTTCAGCAAATCTCATTTACATGATCCAATAGAAGGTCCTGCCAGAAATCCTCATTTGGCCCTTGGAAATGAAACTCTACCTAGAATTCGTGCTGGTCAAGGTCAATTCCGTGGTCGTCTTTTGTCTCAACAAGATAAGCAATTGATTCCCAATCAATCTCCTATGAGGGATGATAATGCTGCCCCAATTAGGGAAGTGGACCCAACCATACTTAATGTTGGAACAAGCTCTCACTTTGCTGACCACCAAATTGTTGTGCCAGAAAATCTCCATTCTCAACCTAGTGGTCAAGTTTTGCATAACAACAATGCAACACGCATTGAGAAAAAACGAAAGGGTGAAGATGTCCGTGATGTAGAAGCGCATGAGATGAAAATCCGGAAAGAGATTGAGAAGCAAGATAACCTTAGACGAAAGAATGAAGAGAGGATGAGAAAAGAACTAGAGAAACAAGATCGTGAAAGAAAGAAGGAAGAAGAGAGGTTAATGCGTGAGAGACAGCGGGAAGAGGAAAGAGCAAGACGTGAGCAAAAACGTGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAGAGAAAATTTAAGGGTAGAAAAAATGAAGATAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTGATTTTGATACTTTGCAGCATGTGGAGTCATTTAGGGATTCACTGTGTGTTTTCCCACCAAAGAGTGTAAAGCTAAGAAAACCATTTGCTATCAAACCCTGGATGAACTCAGAGAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGATTCAAGATTATTGGGTGAGATACATGTTGCTCTTCTTAAGGTGGTAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAAAATGGTGCTGCTAACTCTGGAGGTGGTCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTGAATCTATTGACGTGGCCAGAAATTTTCCGACAGCTAGCTTTATCTGCAGGATATGGTCCACAGTTGAAGAAAAGAAGTACTACCTGCTCATATGCAAATAATAAAGATGAGGGAAGAAGTTGTGAAGATATCATTTCTAAACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCAGGTACAGTTAAATTTGCAGCATTTCATGTTCTATCGCTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACCTGACGACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATACCAAGCTTTTTGAAAGAATAGCACCGTCAACATATTGTGTACGCCAGGCATTTAGAAAGAACCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAGGATACTGATGACGTTGAAAGAGAAGAGTCAGAGAGTGATGAAATTGACGAGGACCCTGAAGTTGATGATTTGGTAAATTCGTCAAGTGCTAACAAAACATCTGGACCATGTGATGATTTCTCATCCAATGGAAAAGAAAATTTGGGCCATGATGTTGGACTTCAGGGTGAGTTTGATAAGGATCTGCCTCGTTTTCCTGAGAGTGGTTCCAAGAAGATTGATACTCCAATTGCTGTAACCGGGAAACCTGGTGCTTGTGAAGATTTAAATGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAATTTTCTGACCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAACTCAATCCGTGTCGTTCTAGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTAGATAAATTTCGATTAAAAGATGATATTTTCAGTAAATCTGATTTTCCATCTATCAATGGGAATAAAGTTGAAATACTACATTCTTGTTCTGCCATGGAGGGAAACCAAAGCCCATCATTGCATGGCAACAATTGTAATAATGTGCCCTCTCCCGGCACTGCAGAAAATCAAAAAGCAGCTCCAGGTGTACAGAGCCTGTCTATTGAAAAACACTCTTCAGTTCAAGATCTCTGCACTGGCCCAGATAACCCTCAGATTCAGACATTTGCACAGTATTCAAAAAGGTCACGGTCTCAACTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTGTGCCTACAGATCCTTACCCCTTGGGCAAGATCGAAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGCTCTGGCAGGATCTTCGTTGAGTTCCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCACTTTTGAATTCGCTTGATTCACGTGGGGTCAGGGAATCTCATTTGCGACTAATGTTGCAAAAGGTTGAGAGTTCCTTCAAGGAAAATGTTCGTAAGAATACACAATGTTCCAAAGTTGGAAGCAGAGGTGAAACGTGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGATCGCCACACTGGATCCGACAGTCCCAGCAGCACCCTTTGTGGCTTGAACTCTGACAGTTTGGAAACTTCCTCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAGTGGACATGGAAAGAATGCTATAACTCATCAATATTATGCGCCATGAAATACGGGAAGAAAAGAGGCAAATCTCAGGTTGTCGTCTGTGATATCTGCCTCAATCCTTATTTCTTTGAAGACTCCCATTGCAATTGTTGCCACCGAACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTGCAATGTGGAGAAAAATTATCAAAAGATATTTGCATTTTGGATTCAAATCTTCCCTTACGGACAAGATTGCTTAAGGCCCTGCTAGCTCATATTGAGGTTTCTATTCCACCTGAAGCATTTCAATCAAATTGGATCGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTAGAGGAACTGCTGCAGATATTGGCCCTACTTGAGAGAGCATTGAAGCGGGACTTTCTATCATCAACCTTCTCTACAACAGGGGAACAATTGGGGTTGAACACTATGTCAGAGAATGCTGCACAAAGCTCCGCTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACAACTTCAGCCGTGTCTCTCAGACTATTTGAGTTTGATGAATCAATTGTCTACGTACTGCATGAGAAACCTGAACCTTCTTTGGAGAAAGAAGATAGGCAATACATAAAGCTTCCTTCAAGATACAATGCTTCCAAATCTGTTAAAGTGGTTGAAACAGCAGACTTGGACGGTGATGAATTCATGAAAGTTAAATCTAATCCTGCGAAGATTGTGCAAAACAACAATAAACGAGGACGAGGTAGTTCTGTGAAAGTACGGGGTAAAAATATATCTAAAACCAAACGAAATATTGGCCGTCGGCGCAGTGCTAAGGTTGCTGGGAATCTAAATCAAAGGGTAAAACAACAGGGAGGGGGATCACAAGGACAAGCTGGTGGACGTGGTCGTCGAACAGTTCGAAAAAGAAGAGTGGGGAAAAAGGTTGTTGAAGATCTGTTGCTTGGCCATAGGGGTGCCTCTCATAGCTCCAACATTGCTAGAGAATCATTAAGAAGCTTGGATGAGGAGTGGGATGATGAAAAGGGAAGTCCCATGACTCCAATCCACATGGGGACTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAGGCAATGGAGTCTGATGAAAATATCCAGGCAATGGAGTCTGATGAAAATATCCAGGCAATGGAGTCTGATGACAATATCCAAGCAATGGAGTCTGATGACAATGTCCAAGCAGTGGAATCTGATGACAATGGCCAAGCTGTGGAATATGATAAAGGAAACTGGGAAATAGGGTTTAATGGTAATCCCAGCCGATGGCGGGAGGATATGGTTGGAATGAGTGATGAAGATGTGGAAGCTTCTGAAGATGAGAATCAGAACGAGAATGGCATTGAAGAGAATGAAGAGGAGGATTCAGATGCAGATGTTATGAGCGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAAGCTCAGACTCAGATGTCTCTGAAGATTCTTCTGATTAG 5388 0.4289 MEEDGYSEGDNNRKRGGTDDDSNENNNNSTNHGSSYKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKEKKDLTSKKLPRKVVAEPLPESPTDDPMLGPPELGNEYGSGSGSGSSPYARVEPLNIVPRGVPGYYESPRAMMENRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEPQKLPTFAYESKIYERHDVRANKAMTRTFRDYRSLPSQSGTRSDTSGPFSKSHLHDPIEGPARNPHLALGNETLPRIRAGQGQFRGRLLSQQDKQLIPNQSPMRDDNAAPIREVDPTILNVGTSSHFADHQIVVPENLHSQPSGQVLHNNNATRIEKKRKGEDVRDVEAHEMKIRKEIEKQDNLRRKNEERMRKELEKQDRERKKEEERLMRERQREEERARREQKREIERREKFLLRENLRVEKMKIREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQHVESFRDSLCVFPPKSVKLRKPFAIKPWMNSEKNVGNLLMVWRFLITFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVVIKDIEDVARTPSTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSTTCSYANNKDEGRSCEDIISKLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRQAFRKNPADAESILSEARKKIQIFENGFLAEEDTDDVEREESESDEIDEDPEVDDLVNSSSANKTSGPCDDFSSNGKENLGHDVGLQGEFDKDLPRFPESGSKKIDTPIAVTGKPGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEFSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKFRLKDDIFSKSDFPSINGNKVEILHSCSAMEGNQSPSLHGNNCNNVPSPGTAENQKAAPGVQSLSIEKHSSVQDLCTGPDNPQIQTFAQYSKRSRSQLKSYIFHIAEEMCAYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEFLDGNWRLIDTEEAFDALLNSLDSRGVRESHLRLMLQKVESSFKENVRKNTQCSKVGSRGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDSLETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRGKSQVVVCDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHALQCGEKLSKDICILDSNLPLRTRLLKALLAHIEVSIPPEAFQSNWIEDIRRHWSVKLSKSSSVEELLQILALLERALKRDFLSSTFSTTGEQLGLNTMSENAAQSSADPESVAVLPWVPLTTSAVSLRLFEFDESIVYVLHEKPEPSLEKEDRQYIKLPSRYNASKSVKVVETADLDGDEFMKVKSNPAKIVQNNNKRGRGSSVKVRGKNISKTKRNIGRRRSAKVAGNLNQRVKQQGGGSQGQAGGRGRRTVRKRRVGKKVVEDLLLGHRGASHSSNIARESLRSLDEEWDDEKGSPMTPIHMGTANISNSTEEAESDDNVQAMESDENIQAMESDENIQAMESDDNIQAMESDDNVQAVESDDNGQAVEYDKGNWEIGFNGNPSRWREDMVGMSDEDVEASEDENQNENGIEENEEEDSDADVMSEGSDGTANRIVNEESSDSDVSEDSSD 1795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1739 1768 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 250 266 - -
Phco4g02660 1795 CDD homeodomain 49 103 IPR001356 GO:0003677
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1557 1598 - -
Phco4g02660 1795 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Phco4g02660 1795 Coils Coil 383 448 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1233 1248 - -
Phco4g02660 1795 SMART HOX_1 46 108 IPR001356 GO:0003677
Phco4g02660 1795 Pfam HB1, ASXL, restriction endonuclease HTH domain 740 808 IPR007759 GO:0006355
Phco4g02660 1795 ProSiteProfiles DDT domain profile. 558 617 IPR018501 -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1 53 - -
Phco4g02660 1795 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Phco4g02660 1795 MobiDBLite consensus disorder prediction 837 884 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1571 1585 - -
Phco4g02660 1795 SMART testlast3 558 617 IPR018501 -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1043 1065 - -
Phco4g02660 1795 SUPERFAMILY Homeodomain-like 31 103 IPR009057 -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 116 151 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 863 880 - -
Phco4g02660 1795 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1122 1194 IPR028941 -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1710 1795 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 22 53 - -
Phco4g02660 1795 ProSiteProfiles HARE-type HTH domain profile. 740 809 IPR007759 GO:0006355
Phco4g02660 1795 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 34 1795 IPR044977 GO:0006357
Phco4g02660 1795 MobiDBLite consensus disorder prediction 400 441 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 7 21 - -
Phco4g02660 1795 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 946 988 IPR028942 -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 837 862 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 1219 1248 - -
Phco4g02660 1795 Coils Coil 454 485 - -
Phco4g02660 1795 Gene3D - 32 106 - -
Phco4g02660 1795 MobiDBLite consensus disorder prediction 250 278 - -
Phco4g02660 1795 Pfam DDT domain 560 614 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02660 Phco-Chr4 47931137 47940795 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phco4g02660 WSD 2.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02660 4 47931137 47940795 Phco4g02660 4 47931137 47940795 ECH
Phco4g02660 4 47931137 47940795 Phco11g00447 11 3025508 3035290 PCT