Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02635 ATGGTAGTAGTCACCCCTCCAACAGCGTCTAACAAATGGACACAGTTATCTTCTCTTGCATCTCAGATAGATGATCGCAAGGCCTCTATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCAGCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCTAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGTTGCAGAAAAAACAAGCGTGTCAAACGTCCAAACGGTGACGCTTCTGCTAACTCCCCCCCTTCTTCCTCCACTCCTAGCTCCAATTCAAACCCTCCTTCACGGCCCCACATCCCTTCTAGTTCAACCGCAAACCATGTTAATGTAAACCCTTTGTTTTATGGACTACCCAATAGTAACGGTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCATTCTCAGCTGAATGCCCTTGGGTTAGGTTTTTCATCCGGGGTTAACGTTATCTCAAGTGAAGCTAGTGATAATGGGTTTAGTACTACTACTACTACTTCAAATACTAACAACTTTCTTTCGGCTTATAATTCCATATTTGGTTCTTCTTCCTCCTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCTACTCTCCTGCAGCAGAAGTTTATCGGTGGTGCTGGGGTGAAGGGTGATCATGATGGCAACGGTTTCCAGGGTTTTGCACCGCTACAAGGGTTGCAAATGGAAGGGAGTAATAATATTAGCTCAAAAGAAGTGAAAGCTGAAGGACCAAACAGGTTGGAGTTGGAGTGGAGTAATAATAACAATAACAATGGTGGTGGTGGTGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACGGGTTTGACTGCTTGGAGTGATCAACCTAACTTTGGTCCTTCAGTCACTTCTCTGATCTAG 1047 0.4585 MVVVTPPTASNKWTQLSSLASQIDDRKASMGRVMEKPTQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNGDASANSPPSSSTPSSNSNPPSRPHIPSSSTANHVNVNPLFYGLPNSNGCDVMDVPFPRFNLHSQLNALGLGFSSGVNVISSEASDNGFSTTTTTSNTNNFLSAYNSIFGSSSSSTCAPSTPVMASLLSSTLLQQKFIGGAGVKGDHDGNGFQGFAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNNNNNNGGGGGACQNQMEHVGLSDPNSLYWNTATGLTAWSDQPNFGPSVTSLI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02635 348 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Phco4g02635 348 MobiDBLite consensus disorder prediction 111 139 - -
Phco4g02635 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 213 IPR045174 GO:0003700|GO:0006355
Phco4g02635 348 MobiDBLite consensus disorder prediction 93 139 - -
Phco4g02635 348 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Phco4g02635 348 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02635 Phco-Chr4 47717652 47718853 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco4g02635 zf-Dof 1.8e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02635 4 47717652 47718853 Phco4g02635 4 47717652 47718853 ECH
Phco4g02635 4 47717652 47718853 Phco11g00428 11 2837210 2839053 PCT