Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02624 ATGGAGAACAACCCTAGTTCATCAAGAAGTGATAGAAAATCCGTTGAGAGGGATAGAAGAAGTCAAATGAGGGATCTTTTCTCCAAGCTCAACTCAGTACTGCCTCATCAAAGCTCAAGGGAGAGAATTTCGCGGCCAGATCAGATAGGTGAAGCCACAGCCTACATAAAGAATTTACAGATTAAGTTGGAGAAAATGAAGGAGAAAAAAAGCAACCTTACAGACATTGAAAGGTCAAGAAATGATAGCATGAATATGGGGTTGAAATCTCCACAATTTAAGATCCAACAAATGGGTTCAACCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTGTCAATTCATTTTCAATGAGACCATTCGTATTCTTCAAGAAGAAGGATCAGACATAGTTAATGCCACTTATACAGTTGCTGAAAATGCAGTTTTTCATACAATACACTGTCAGGTAGATGAATCTGCCAATGGAGCTTTGAGGATATCGGAGAAACTGGAGAATTATGCCAATGGATGGTAG 516 0.3934 MENNPSSSRSDRKSVERDRRSQMRDLFSKLNSVLPHQSSRERISRPDQIGEATAYIKNLQIKLEKMKEKKSNLTDIERSRNDSMNMGLKSPQFKIQQMGSTLEVVLVTGLDCQFIFNETIRILQEEGSDIVNATYTVAENAVFHTIHCQVDESANGALRISEKLENYANGW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02624 171 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 164 - -
Phco4g02624 171 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 72 IPR036638 GO:0046983
Phco4g02624 171 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Phco4g02624 171 Gene3D - 1 76 IPR036638 GO:0046983
Phco4g02624 171 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Phco4g02624 171 Coils Coil 49 76 - -
Phco4g02624 171 MobiDBLite consensus disorder prediction 1 44 - -
Phco4g02624 171 MobiDBLite consensus disorder prediction 1 25 - -
Phco4g02624 171 SMART finulus 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02624 Phco-Chr4 47570882 47578787 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g02624 HLH 2.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02624 4 47570882 47578787 Phco11g00421 11 2777964 2778977 PCT