Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02613 ATGCATAGTCAACAAACAGAGAAAGAAGAAGAGGATGAAGGCCCACCACCGGGGTGGCAACCAATTTCCACTCATCCGCCGCCACCGCCGCAACTGCAACCGCAACCGCCGCCGCCGCAACGTCCATGTGGTTGGGTTCAGATGGTTTGCGGTTCTTGTCATCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTTAAATGTTCATGCTGTGAGACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTGAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCCTCATGCCAGTTTGTGACAGAAATTGGGGCACACAACAAGCGGCCTCCATGGTCTGTACAACAAAGGAAACCAATTCCTGCAAAATCTGGTTGTTAG 417 0.494 MHSQQTEKEEEDEGPPPGWQPISTHPPPPPQLQPQPPPPQRPCGWVQMVCGSCHRLLSYPRGAKHVKCSCCETVNIVLEADQVGQVECGSCAVLLMYPYGASQVRCSSCQFVTEIGAHNKRPPWSVQQRKPIPAKSGC 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02613 138 MobiDBLite consensus disorder prediction 1 15 - -
Phco4g02613 138 NCBIfam zinc finger domain, LSD1 subclass 47 77 IPR005735 -
Phco4g02613 138 NCBIfam zinc finger domain, LSD1 subclass 85 113 IPR005735 -
Phco4g02613 138 MobiDBLite consensus disorder prediction 19 40 - -
Phco4g02613 138 Pfam LSD1 zinc finger 88 112 IPR005735 -
Phco4g02613 138 Pfam LSD1 zinc finger 50 74 IPR005735 -
Phco4g02613 138 PANTHER PROTEIN LSD1 4 135 IPR040319 -
Phco4g02613 138 MobiDBLite consensus disorder prediction 1 40 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phco4g02613 zf-LSD1 1.1e-11 No_clan