Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02609 ATGGTTGATAATAATGAGTTAGAGCTGAACCTTGGTTTAGGCAACAACAACTTTGGTGGTGATGCACATGCAGGGCAGTCACCAAGGCAAAGGTGCCCTCCACCATTTCTGTTGAAGACCTATGATTTGTTGGAAGAAGGTGAAGCTGAAGATATCACCAAAATTGTGTCTTGGAATGCAGAAGGAACTGCCTTTGTTGTGTGGTCTCCTGCTGAATTCTCTGAGCTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACATATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCAGATGCTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTCAAGTCTTCTTCTGAGGAAAATGCAACGAGTTCTACGGAAGAAAACAATCAGCAACTACTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGACGAATGCAAAGCACTTGAAATGAAGTTGTTGGCATGCCTCTCTCAGTTTATGGATACCCACCAAACTAAAGTTAGGAGACTCTGTTAA 621 0.4203 MVDNNELELNLGLGNNNFGGDAHAGQSPRQRCPPPFLLKTYDLLEEGEAEDITKIVSWNAEGTAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRQMLGEITRKKCEPSVFPAYLKSSSEENATSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEMKLLACLSQFMDTHQTKVRRLC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02609 206 Coils Coil 149 186 - -
Phco4g02609 206 Pfam HSF-type DNA-binding 36 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02609 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 179 IPR027725 -
Phco4g02609 206 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02609 206 Gene3D - 28 129 IPR036388 -
Phco4g02609 206 SUPERFAMILY "Winged helix" DNA-binding domain 33 128 IPR036390 -
Phco4g02609 206 FunFam Heat stress transcription factor A-6b 29 129 - -
Phco4g02609 206 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02609 206 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02609 206 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g02609 206 SMART hsfneu3 32 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02609 Phco-Chr4 47398089 47399858 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g02609 HSF_DNA-bind 4e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02609 4 47398089 47399858 Phco4g02609 4 47398089 47399858 ECH