Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02596 ATGAATGCATTGAGTTGGACATGGATTTGGATGGGAAGAGTGAATGGTGCTAGTTGGGGAGAGTCTTTAGCAGCCTGTGGGATGTGGAACCCAAAGAAGAAACGGTCATTCCTGTGGCAAAGAGTTGGACCAAACCAATCGCATCCCAGGATCATTATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGGAGCCCTTCTCTTACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTTAAGAGTTTTTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGATAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAGATGGAAGACAGGTAGCAGTGAAGACGCTTTCAGCTGGGTCAAAGCAGGGAGTTCGTGAATTTTTATCTGAAATTAAAACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGGTTGGTTGCTGCGTTCAAGAAACCAATCGCATATTAGTTTATGAGTATGTGCAAAATAACAGCCTTGATCGTGCATTACTTGGTGGTAGAGGTTCAAATATCATATTAGACTGGAGAAAAAGATCTGGTATTTGCATGGGTACTGCTAGAGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTGCATAGAGACATCAAGGCAAGCAACATACTACTTGACAGACATTTCAATCCAAAAATAGGAGATTTCGGGTTGGCTAAATTATTTCCAGATGACATTACACACATTAGCACAAGGATTGCTGGAACGACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGGGTTCTTATTCTTGAAATAATCAGTGGTAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATATCTCTTGGAATGGGCCTGGCAACTGTACGAAGAAGGGAAACTGTTGGAGCTTGTGGATCCAGACATGGTTGAATTCCCTGAGGAAGAGGTAATTAGGTATGCGAAGGTTGCTTTTTTCTGCACACAAGCTGCAGCAAGTAGAAGGCCAATGATGTCCCAAGTGGTGGATATGCTGTCCAAGAACACGAGGCTGAATGAAAAGCAAATAACAGCACCAGGGTTTTTCCAGGATTCAGGAGCATCTTCTCAAAAGAAGTCATCCTTTGGATCCACAAGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGGTGA 1260 0.427 MNALSWTWIWMGRVNGASWGESLAACGMWNPKKKRSFLWQRVGPNQSHPRIIMSCGCFGASTLKKKRSPSLTPNEIDGFPLDNVKSFSDKDLRLATDNYHPSKKIGRGGFGTVYQGTLKDGRQVAVKTLSAGSKQGVREFLSEIKTISNVKHPNLVELVGCCVQETNRILVYEYVQNNSLDRALLGGRGSNIILDWRKRSGICMGTARGLAFLHEELVPHIVHRDIKASNILLDRHFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTLKADVYSFGVLILEIISGKSSARTNWGGSNKYLLEWAWQLYEEGKLLELVDPDMVEFPEEEVIRYAKVAFFCTQAAASRRPMMSQVVDMLSKNTRLNEKQITAPGFFQDSGASSQKKSSFGSTSYQFSSNPSSITQLAPR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02596 419 Pfam Protein tyrosine and serine/threonine kinase 102 369 IPR001245 GO:0004672|GO:0006468
Phco4g02596 419 Gene3D Phosphorylase Kinase; domain 1 72 174 - -
Phco4g02596 419 MobiDBLite consensus disorder prediction 384 419 - -
Phco4g02596 419 SMART serkin_6 99 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02596 419 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Phco4g02596 419 FunFam Putative LRR receptor-like serine/threonine-protein kinase 175 381 - -
Phco4g02596 419 CDD STKc_IRAK 105 371 - -
Phco4g02596 419 SUPERFAMILY Protein kinase-like (PK-like) 83 392 IPR011009 -
Phco4g02596 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Phco4g02596 419 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 64 403 - -
Phco4g02596 419 FunFam cold-responsive protein kinase 1 70 174 - -
Phco4g02596 419 ProSiteProfiles Protein kinase domain profile. 99 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02596 419 Gene3D Transferase(Phosphotransferase) domain 1 175 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02596 Phco-Chr4 47258168 47262805 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g02596 PK_Tyr_Ser-Thr 3.7e-46 CL0016