Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02567 ATGGCGGATGATGAGGTGGACTTTTCGAAACTGTTCCCCGGTGACGATGACGATGACGACATGTTTTATATAGATATGCATACCGTTCTGGAGGTTCTTGATGAAGACGATGATTGTGATTTTCTGGAGAAAATTCCCGAGGATTCTTCATCAAAAAATGTTTCACCCAGTGAATCTGGAACTCATGACACATTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCACAATTTTCTAGGTTGGGCTTTGCAGATTCAGTCACCAGTTTTTCTCCGTTCTGCTCTGATGTGTCAGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATTGTGAACCTGAAAACCAGGGACCTCGATCTCAGGCTTGCTCCTCCCCAAATGCATTTCCTGGTAATCTCAGTAACTCACTCTCCCAGGGTGAAAGTGATGAGGTTTTCTGCACAGAAAGGACCAGAGTCTCTAAACATGAGGTACCTGCTTGTAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAAAAATATATCAATTTGTGGAGATAATTTGAATCCAAGTCTGTGGAATGGTGAAAATGATATCCAATTCAAGCATTTGCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATTGTTGACAATGATGATGTAAATATTGAAGGATATGTTGAAGACACCATTGGAGGAGTTTCTGGACAACAGGAAAATGATTCGTGTACATCTTTTGAAGCGTTTATGGATGCTGATATATCTTTGCATGTTGCAACTTCAGCTGATTCTACTATTGGTCAAGGTTCCCATGCTTCAAGTGATTTCATTGACTACCATGGATCTTCAGCTTATTACAATGGAATGCATAATGGACCCTTTATTGCTGCTGACTCTTCTCTTCTTATTTTGCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGCCAAAAATGTGGATTTAAATGCTGATATTACATGTATGAGTAATGGCATGCCCTCAAACACTACTGGGTGGATGTCTTTTCAAGATTTAAGTGATAATGTGTATCCATCTTTTCATTCTAGTAAAGGTAATTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGATTCATACATGCCATATGAAGACCATTGCCAAAACAATTTTCAGTGTGGGGATGCTAAGTTCAATGTAGGCCAATGTGTGAAACAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATTTTTTGAGATTGAAGATAATTATGCAGTTATATCTGGGATATCCAATCAAAATCAAGATAGCAATGGTGGAATTGCTAGTTTTCAAGGAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCATGCACTAATCACCAGTGAGAAGCAGTTTGGTTGTATTAAGAGAGAAGGAGGGGTTCAACATAAGCTTGTTGATTCTCATCTTTCAAAAGGAAAAATTAAGAATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCACTGGGAATTTCTCTAATATTTCTCAATCTTCTGGATATGCCAATTCTCAGTCTTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAACCAAAGTCAGAACTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCACAAAAGTGAATCGGATTCTCTGAATCTAGATGTGGATGATGACGTGCTTCCTCAGAATGGTCGAGTAAAGGAAGAATCTAATATCTGTGAGGATAAGTCAAGTAGATATCCAGTCAAGAGTATGAATTTGCTAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTATGTCAATGGGCAGAGGAGTTGCGTAGCAAGGTAACTAGTCAAACAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCTAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCAGGCTGTATCAAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAGTGGCAAGAGATCAGATGGAACAGTTCCTGAGGCTAATGCTCGACCGCTTGCAAAGGTGGCGTGGTTCAGGGTTGTCTTGGATGAGGCCCAAAGTATAAAAAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCGAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATAGACGATCTCTACAGTTACTTCAGATTTTTAAGATATGACCCCTATGATGTCTATATATCCTTTTGTTCTAAAATCAAGAACCCAATTAGCAGAAATCCAACAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGGACCAAGGGTACACTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAATATATTGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTCAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCTCTCTGTAGTATTTGTAATGATCCTCCTGAAGATGCGTTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACCGGTGATGACAACCATTGCCCTGCTGCAAATTGTAAAATTCCACTGAGCACATCTAGGGTATTTTCAAAAGCCACTCTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAGTTCACCTGGTTGCTCTGGTTCCGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCACTGTGTAAGCCACAGTCCTATACATCAAAAAGCACTTCCGAGCATAGCACTTTCAGGGAAGATAATGATTGCCCTGGGAACCCCTCCAATGCTGACAATGGGAAATCCTTCATAGATTCTCATAAGCATCAAAATTTGTCTAATGATAATAGATGCCATGGTGATTCAGTTACTGTCGTAGGGGATAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGGGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTCTCAAGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGTCTGTCTTGAGATTAACGGTGAAAGATACAGTTGAAGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAATGATGGTTGCATCTGCCTTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACCGTGGATGATTTAAAATATTTATTCATGATGTGA 4050 0.4032 MADDEVDFSKLFPGDDDDDDMFYIDMHTVLEVLDEDDDCDFLEKIPEDSSSKNVSPSESGTHDTFQIQNGSQVLEEPQFSRLGFADSVTSFSPFCSDVSDSGVRGSVGVSDSVANSWLDCEPENQGPRSQACSSPNAFPGNLSNSLSQGESDEVFCTERTRVSKHEVPACSVESSFPEAQSKNISICGDNLNPSLWNGENDIQFKHLREDVEFENTSISSIVDNDDVNIEGYVEDTIGGVSGQQENDSCTSFEAFMDADISLHVATSADSTIGQGSHASSDFIDYHGSSAYYNGMHNGPFIAADSSLLILPNGFCSQLPNDEMMNNMKAKNVDLNADITCMSNGMPSNTTGWMSFQDLSDNVYPSFHSSKGNFDDMSSLSLSACDSYMPYEDHCQNNFQCGDAKFNVGQCVKQTPGIFSSVGCQAYQFFEIEDNYAVISGISNQNQDSNGGIASFQGNVDNLNLQAANISWPHAHALITSEKQFGCIKREGGVQHKLVDSHLSKGKIKNFHVEEDPDVCIIEDISHPAPTSRSTITGNFSNISQSSGYANSQSYMVGSTRLKACDERNILRVALQDLSQPKSELSLPEGLLAVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNAHKSESDSLNLDVDDDVLPQNGRVKEESNICEDKSSRYPVKSMNLLNQAKGRPSAGTLIVCPTSVLCQWAEELRSKVTSQTNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDQAVSSRKRKSPSNSSKSGKRSDGTVPEANARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYISFCSKIKNPISRNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNHCPAANCKIPLSTSRVFSKATLNSCLSDQGCDSSPGCSGSEVEEFEPWSQSQPYESSKIKAALEVLKSLCKPQSYTSKSTSEHSTFREDNDCPGNPSNADNGKSFIDSHKHQNLSNDNRCHGDSVTVVGDKAIVFSQWTRMLDLLEGCLKKSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVASQVLMLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKDTVEDRILALQQKKRMMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02567 1349 MobiDBLite consensus disorder prediction 768 811 - -
Phco4g02567 1349 SMART ultradead3 591 893 IPR014001 -
Phco4g02567 1349 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1185 1344 IPR001650 -
Phco4g02567 1349 Gene3D - 565 656 IPR038718 -
Phco4g02567 1349 SUPERFAMILY RING/U-box 1029 1081 - -
Phco4g02567 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 916 IPR027417 -
Phco4g02567 1349 ProSiteProfiles Zinc finger RING-type profile. 1032 1071 IPR001841 -
Phco4g02567 1349 ProSitePatterns Zinc finger RING-type signature. 1047 1056 IPR017907 -
Phco4g02567 1349 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 399 1348 - -
Phco4g02567 1349 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 798 928 - -
Phco4g02567 1349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 610 878 IPR014001 -
Phco4g02567 1349 SMART helicmild6 1208 1291 IPR001650 -
Phco4g02567 1349 Gene3D - 805 917 IPR038718 -
Phco4g02567 1349 Gene3D - 690 796 IPR038718 -
Phco4g02567 1349 SMART ring_2 1032 1070 IPR001841 -
Phco4g02567 1349 MobiDBLite consensus disorder prediction 792 807 - -
Phco4g02567 1349 MobiDBLite consensus disorder prediction 119 149 - -
Phco4g02567 1349 MobiDBLite consensus disorder prediction 770 791 - -
Phco4g02567 1349 Pfam Helicase conserved C-terminal domain 1192 1291 IPR001650 -
Phco4g02567 1349 CDD DEXDc_SHPRH-like 595 916 - -
Phco4g02567 1349 MobiDBLite consensus disorder prediction 43 64 - -
Phco4g02567 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 924 1348 IPR027417 -
Phco4g02567 1349 MobiDBLite consensus disorder prediction 1140 1173 - -
Phco4g02567 1349 Pfam SNF2-related domain 615 993 IPR000330 GO:0005524|GO:0140658
Phco4g02567 1349 CDD SF2_C_SNF 1194 1301 - -
Phco4g02567 1349 Gene3D - 1116 1347 IPR027417 -
Phco4g02567 1349 MobiDBLite consensus disorder prediction 48 64 - -
Phco4g02567 1349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 994 1095 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02567 Phco-Chr4 46951312 46959154 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco4g02567 SNF2_N 3.1e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02567 4 46951312 46959154 Phco11g00371 11 2395666 2403635 PCT