Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02526 ATGGGTAGATCACCTTGCTGTGACAAAAATGGCCTCAAGAAAGGACCCTGGACAACAGAAGAAGACCATAAACTTGTTGATTACATTCAGAAACATGGCTATGGAAATTGGAGAGTACTCCCAAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTCGACTCCGATGGACAAACTATCTCCGACCAGATATAAAGCGTGGTCGATTCACTTTTGAAGAGGAAGAGACCGTAATACAACTACATAGCATTCTTGGTAACAAGTGGTCAGCTATTGCTTCTCGTTTGCCAGGAAGAACAGACAATGAAATCAAGAATTACTGGAATACCCACATTAGAAAAAGGCTTCTAAGGATGGGAATTGACCCCGTGACACATAGGCCAAGGCTTGATCTTTTGGACCTCTCTTCCATCCTAAGTTCATCCCTTTATGGTCCAACACAGATGAACATCCAAAGACTGCTTGGTACACAGACAATGGTGAACCCTGAACTTTTAAAGCTTGCTTCATCGCTCTTTTCTTCTCAGCAACGTGAAAACCTCAACATGTGCGCACAAAATTGTGAAGAGAACTTGCTCTGTGATCCCCAAATTAACCAAATCCCACACCTGGTACAAACTCAGGACTTTGCTCAAGAACCATGTAAAACACTAGACAACACAATGAATCCTCCTTGTTCTTCATTGTCATGGCCTTTCGCTCAAGAACAGTTGCTTGAATGCAATATGAACCCGTACCCTTCTGTTTTCCATGACTCTTGCTTCCAACAACATTCTCAACCAAGTGACTTGCAATGCAACGGAATTGATACAAGCTATGTTGCTCAATTACCAAGCTATAACTACCCTGGCTCTGATTATGACTCAAATCTTATGGACCCTCCAATGTCTGAATCCTCAACCTATAACCATTCCCATAACAGCAATCAGAACTTCAGCTTCGCTTCAGTTATCTCAACGCCTTCATCAAGCCCCACGCCGTTGAATTCGAACTCGACACATGTCAATGGAAGTAGCAGCACTGAGGATGAGATAGAAAGCTATGTCAGCAGCAACTTGTTGAGATTTGAAATCCCAGACATGTTAGGTGTGAATGAGTTCCTATAA 1107 0.4273 MGRSPCCDKNGLKKGPWTTEEDHKLVDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETVIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYGPTQMNIQRLLGTQTMVNPELLKLASSLFSSQQRENLNMCAQNCEENLLCDPQINQIPHLVQTQDFAQEPCKTLDNTMNPPCSSLSWPFAQEQLLECNMNPYPSVFHDSCFQQHSQPSDLQCNGIDTSYVAQLPSYNYPGSDYDSNLMDPPMSESSTYNHSHNSNQNFSFASVISTPSSSPTPLNSNSTHVNGSSSTEDEIESYVSSNLLRFEIPDMLGVNEFL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02526 368 Gene3D - 69 116 - -
Phco4g02526 368 CDD SANT 69 112 IPR001005 -
Phco4g02526 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco4g02526 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco4g02526 368 CDD SANT 16 61 IPR001005 -
Phco4g02526 368 MobiDBLite consensus disorder prediction 285 343 - -
Phco4g02526 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco4g02526 368 SMART sant 13 63 IPR001005 -
Phco4g02526 368 SMART sant 66 114 IPR001005 -
Phco4g02526 368 FunFam Transcription factor MYB39 69 130 - -
Phco4g02526 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco4g02526 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco4g02526 368 FunFam MYB-related transcription factor 13 66 - -
Phco4g02526 368 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco4g02526 368 Gene3D - 13 66 - -
Phco4g02526 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 297 - -
Phco4g02526 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02526 Phco-Chr4 46484613 46485945 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g02526 Myb_DNA-binding 2.5e-15 CL0123