Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02525 ATGACGAAAAAGCCCAAGGCGGATGGAGCGGAGGATCCTTTGCCGGACCACCTCCGGTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGACAATCTGAAGCTTTGCGAGATTCACTACCTCCAAGGTCGCCATCGGCAGTACAAGGAGAAGGTTCCGGAGTCCTTGAAGCTTCAGCGGAAACGCAAGACAAGCGAGGAGGAGCCTAATGCTGTGGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTTTGAGGGTTCGGAAGCGCTGGTGGTGGCGGCTCCTTCTCCCGCGAAGAAGAAGGCGCTGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAAACAACAAGAGCAAGAAGAAGAATAAAAAGAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTACGGTGAAGGGGAGCTGAGGAGGGAATTGCCAAATGGTGTGATGGAAATCTCTCCGGCTTCGCCGACCCGTGATTACGACAATGTGGCTTCGCATTTTGACGTGAAAGTTGGTGTTGATTCTAAAACTGTTACTCCACGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGTGGGGAAGTTGCAGATTGTGCCGTATGGATCGAACTTGAAGAAGGGTACCAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGCAATCTCATCCAGTGCTTGAGCTGTGAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTATTTGGACACTCAAAATGAAGTTAAGAAGGCATGCCCAGTTTGTCGTGGAACTTGCAGTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACCGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAGTTAAAGGAAAGAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAACCTGTCCGAGTTGTTCGTATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTCAACGAAAAGCTTCTGGAGAAATTCACTTATCTACTTTCAATCGACCTGATAAAATGAAAACTAGCAGTGCTAGTGAGAGCCAGACTTTGGACGAGAAGGCCGTATCTAGTGGCAATTTAACTGATACTTCAGTATTGCCTGAGTGGACAAATTGTAATGGCATTGATAGTCTATCATGCCCTCCTACAGGGCTTGGTGGTTGTGGTAATAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAATTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGTTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACCGATCACAATACTAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGACAGTGTTGGACATCACTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTGGTCCAAGATGTGCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAATATTACGAGATATGAGAATAATAAAAACGCACTTGAATCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGCATGAGATGCTCAAACTTAAGGGGTTGCTTTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCTGTTCCAGAATACATGCATCCCTGGTCAGGCCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGACATTGGACCATATCTCTATATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTGACAACACTCTGCTATGATCCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAATTACTCAAAAAGCACAAAACTCTGTGTCAAATGAAGACTATTGCTACTGAGGAGCCACAGGAACAAAAAGTGAATGGAATGCAATTATTGCATGTTGAAGAAACGGAGCAAAGAGGCTTGCAGAGTGTTGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGTTAAAAGAGTTTCTAGTCAGAGCATGGACAGCAATATTTCCCAGAATGGAGAATGTGATTTCTTTACCGAATCTGATTCCGGACGCACTCTACTTCTCCTTGGGACTGTTCAAACCACTGAAATCTCTAAACAGGATATTCCTAGAAAACCCTTTGAAAGCTCAAAAAGACTTAAAAATAAGTTTAATGAGCATTTGGGCGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCAAAGCTTGTAGAATACCTTAAACGACACTATGATGAATTTTCTTTTACACGTGACTATCACAAGAAGATGGTTCACCCAATTCTAGATCAGAACATTTTTCTTGATAATACTCACAAAATGAGACTAAAGGAGGAATTTAAGATTGAACCATGGTCTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCGAAGTCTTGTGTTCATGCGGTATTAGAATTTGTGTCCCCTGAAAATGTTACCGAGGGTATCCATTTGATTGATGAGGTCCGACTATTGCCTGAAGACCATAAAGCAAAAGCAGACATGCTAGAGGTAAAGAAAATGGCGCTTCATAGTATGAATACAGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA 3093 0.4252 MTKKPKADGAEDPLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKTSEEEPNAVDNVESRARRTSRIVKKKRRLFEGSEALVVAAPSPAKKKALKQGDMQLELIRMVLKREAEKKNKNNKSKKKNKKKNKKKKKKEEEEELCYGEGELRRELPNGVMEISPASPTRDYDNVASHFDVKVGVDSKTVTPRYFRSKNVDRVPVGKLQIVPYGSNLKKGTKGKRKKCHWCQRSESCNLIQCLSCEREFFCMDCIKERYLDTQNEVKKACPVCRGTCSCKDCSASQCKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKHISEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRTCPSCSYSLCSSCCQELSQRKASGEIHLSTFNRPDKMKTSSASESQTLDEKAVSSGNLTDTSVLPEWTNCNGIDSLSCPPTGLGGCGNSHLELRSVFPSNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPTVLDITGDNFEHFQKHWGKGHPIVVQDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNALESCLDWWEVEINIRQYFTGSVKRRPQRNTWHEMLKLKGLLSSQIFKEQFPAHFAEVIDALPVPEYMHPWSGLLNLAANLPHGSAKHDIGPYLYISYGSADKETDSVTTLCYDPYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIATEEPQEQKVNGMQLLHVEETEQRGLQSVVEEGMNFFRRVNRTSCISTEVKRVSSQSMDSNISQNGECDFFTESDSGRTLLLLGTVQTTEISKQDIPRKPFESSKRLKNKFNEHLGAQWDVFRRQDVPKLVEYLKRHYDEFSFTRDYHKKMVHPILDQNIFLDNTHKMRLKEEFKIEPWSFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIHLIDEVRLLPEDHKAKADMLEVKKMALHSMNTAIKEVRQLTSKT 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02525 1030 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 1029 IPR045109 GO:0032454|GO:0033169
Phco4g02525 1030 Gene3D Cupin 552 1002 - -
Phco4g02525 1030 MobiDBLite consensus disorder prediction 423 444 - -
Phco4g02525 1030 MobiDBLite consensus disorder prediction 1 22 - -
Phco4g02525 1030 SUPERFAMILY Clavaminate synthase-like 560 1016 - -
Phco4g02525 1030 MobiDBLite consensus disorder prediction 139 154 - -
Phco4g02525 1030 ProSiteProfiles Zinc finger RING-type profile. 247 293 IPR001841 -
Phco4g02525 1030 MobiDBLite consensus disorder prediction 55 81 - -
Phco4g02525 1030 Pfam JmjC domain, hydroxylase 878 971 IPR003347 -
Phco4g02525 1030 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Phco4g02525 1030 Pfam WRC 15 56 IPR014977 -
Phco4g02525 1030 MobiDBLite consensus disorder prediction 133 162 - -
Phco4g02525 1030 SMART cupin_9 661 993 IPR003347 -
Phco4g02525 1030 Coils Coil 128 164 - -
Phco4g02525 1030 ProSiteProfiles JmjC domain profile. 680 993 IPR003347 -
Phco4g02525 1030 FunFam Uncharacterized protein 549 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02525 Phco-Chr4 46462841 46468633 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco4g02525 JmjC 2.4e-09 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02525 4 46462841 46468633 Phco11g00326 11 2103045 2108908 PCT