Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02522 ATGACCCCTGTAGCCAAATATACAGTTTTTCTGCTCCTTCTATTCTTTCTCTTCTCTTTTCATACCTTCTTCTCTCATGCTGCCAATTCCCTATCAGGAGAGAAAGAAATCAAAGACAATAATGGTACTGACAATTTGGTGTCAGAAGACCTCAGCTTTGAAATGGGTTTCTTCGGTTTTGATAACTCTTCAAGATACGTTGGGATTTGGTACCACAAGTTTCCTAGTTCAGCTTCAGCATTCATATGGGTAGCAAATAGAGGGAAACCCATCAACGGAAGAGGAGGTTCCATCAAAATCAAAGGTGACGGAAACTTGGTTGTTCTCGATGGAGAGAACAACGAGGTGTGGTCAACTAACAAGTCAATGGCAAGGAACATCACAAAAGCTGTTCTTCATAAAGATGGGAACCTTGTTCTTTCAGAAGAATCAGAACATGAGAAAGATGTGTGGCAAAGCTTTGAGAACCCAACTGATACTTTCGTGCCAGGTATGTCACTGCCAGCTAGTGCTGGAGTCGGTTTGTTCAGGTCATGGAAATCGGCAACGGATCCCGCACCGGGAAACTACTCAATGGGGGTTGACTCTACGGGATCAACGCTACAGATTTTGATATTGGATGGGGACAAAAAGAGGTGGAGAAGTGGGTATTGGGATGGTAGAGTATTCGTTGGTGTCTCCAATATGACAGGAAGCTCTCTTTTTGGTTTTAAATTGAATGGGAATAACTTTACATATACATGGAGTGGCCCTGAAAAGGTGAGGTTTCAAATAACTTGGGATGGGTTTGAGAAGAAGTTCGTATCGGATGAAGATCAACAACAATGGAATAATACACAACATGAGCCTTATAATAAGTGTGAGACTTATAATTTTTGTGGCAATTTTGCATTGTGTGATATCTCTAAGGCAGATGTTTGTAGTTGCATGCCTGGGTTTCAAGGAGGTGAGTGGAATGGGGGAAATTCAGGGGGTTGTAAGAGGAGGACTCTACTGAAGGCTGAGAGAAATACTTCTGGAACTGAGGTTAGTGTTGGTGAAGATGGTTTCTACGTTCAAAGGTGTACAAAGTTGCCAGATTTTGCACGTTTGGAGAGTCCTTCTGACGATGGGGAATGTCAACGGTTGTGTCTGCAGAATAGTTCTTGTACTGCGTATTCATATACTATTGGAATTGGGTGCATGATTTGGTATTTGGACTTAGTTGATATTCAACACACTGAAAATAATTTTGGAAATGTACTCAACATCCGTCTTGCTGATTCTGAGTTTGAAGCAGTCGATGGGGAGAAAAAGATCAAAATTTGGATAATAATAATACCTGTTGTGGTTGGGCTGATCTGCCTTGGAATCTTTGTATTGCTGGTATGGAGGTTTAAGAGAAAACGTAAAGTTTCCTTGGCTTCTGCTAATAACAATGGTGATTTTCCAGTCATTGATCTAACGAGGAGTACAGACTTATCAGCAGAATTTTCAGGATCAACTGAGTTAGGTTTGGAAGGGAATAAGGCAGAACTTCCATTGTTCACTTTTAGCTTCATTGCAGCAGCAACAGACAACTTCTCCCAAAAAAATAAGCTGGGACAAGGGGGATTTGGTCCGGTATACAGGGGGAACCTTCCAGGAGGAGAGGAAGTAGCTGTTAAGAGGCTTTCAAGAAAGTCTAGTCAAGGCTTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTGCAACATAGAAATCTGGTTAGACTACTGGGATGTTCCATTCAGGGAGAAGAAAAAATTCTGGTATATGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCGGTGAAGCAAACACAACTAGACTGGACAAAGCGCTTTGAAATAATTGTAGGCATTGCAAGAGGGCTGCTTTACCTGCACCAGGATTCAAGACTACGAATCATTCATCGGGATCTAAAAGCAAGCAACATTTTATTAGATGAAAACATGAATCCAAAAATTTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAAACCAAAATGAAGCCAACACAAACAGAGTGGTTGGTACATATGGCTATATGTCGCCAGAATATGCAATGGAAGGTCTATTTTCAGTTAAATCTGATGTCTACAGTTTTGGTGTATTGCTACTAGAGATTATGAGTGGGCGCAGGAACACTAGCTTTCGCAACACAGACGATTCAAGTCTCATAGGATATGCCTGGCACCTTTGGAGTGAGCAGAGAGTAATGGAGCTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCACTGAGATACATACACATAGCGATGTTATGTGTGCAAGATTCAGCATCCCGTAGACCAAATATGGCCTCTGTACTGTTAATGCTGGCAAGTGAAGCCACAACTCTTCCTTTGCCTAAACAACCTTTGCTCACAACTTCCACCAGAAAATTTGATGACGGAGATCAATCTTATAGCGAAGGCCTTGACGTGTCAAATGATTTGACAGTTACAATGGTCACAGGGAGATAA 2517 0.4132 MTPVAKYTVFLLLLFFLFSFHTFFSHAANSLSGEKEIKDNNGTDNLVSEDLSFEMGFFGFDNSSRYVGIWYHKFPSSASAFIWVANRGKPINGRGGSIKIKGDGNLVVLDGENNEVWSTNKSMARNITKAVLHKDGNLVLSEESEHEKDVWQSFENPTDTFVPGMSLPASAGVGLFRSWKSATDPAPGNYSMGVDSTGSTLQILILDGDKKRWRSGYWDGRVFVGVSNMTGSSLFGFKLNGNNFTYTWSGPEKVRFQITWDGFEKKFVSDEDQQQWNNTQHEPYNKCETYNFCGNFALCDISKADVCSCMPGFQGGEWNGGNSGGCKRRTLLKAERNTSGTEVSVGEDGFYVQRCTKLPDFARLESPSDDGECQRLCLQNSSCTAYSYTIGIGCMIWYLDLVDIQHTENNFGNVLNIRLADSEFEAVDGEKKIKIWIIIIPVVVGLICLGIFVLLVWRFKRKRKVSLASANNNGDFPVIDLTRSTDLSAEFSGSTELGLEGNKAELPLFTFSFIAAATDNFSQKNKLGQGGFGPVYRGNLPGGEEVAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKILVYEYLPNKSLDCFLFDPVKQTQLDWTKRFEIIVGIARGLLYLHQDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIMSGRRNTSFRNTDDSSLIGYAWHLWSEQRVMELLDSSIGDSTPKSKALRYIHIAMLCVQDSASRRPNMASVLLMLASEATTLPLPKQPLLTTSTRKFDDGDQSYSEGLDVSNDLTVTMVTGR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02522 838 Gene3D - 22 154 IPR036426 -
Phco4g02522 838 Pfam D-mannose binding lectin 81 174 IPR001480 -
Phco4g02522 838 ProSiteProfiles PAN/Apple domain profile. 345 420 IPR003609 -
Phco4g02522 838 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 799 - -
Phco4g02522 838 SMART serkin_6 521 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02522 838 SMART blect_4 37 157 IPR001480 -
Phco4g02522 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Phco4g02522 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 185 IPR036426 -
Phco4g02522 838 CDD B_lectin 46 157 IPR001480 -
Phco4g02522 838 Pfam PAN-like domain 346 404 IPR003609 -
Phco4g02522 838 CDD PAN_AP_plant 347 420 - -
Phco4g02522 838 Gene3D Phosphorylase Kinase; domain 1 486 596 - -
Phco4g02522 838 Pfam Protein tyrosine and serine/threonine kinase 523 788 IPR001245 GO:0004672|GO:0006468
Phco4g02522 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 115 806 - -
Phco4g02522 838 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
Phco4g02522 838 Gene3D Transferase(Phosphotransferase) domain 1 597 799 - -
Phco4g02522 838 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 154 - -
Phco4g02522 838 SUPERFAMILY Protein kinase-like (PK-like) 505 814 IPR011009 -
Phco4g02522 838 PIRSF SRK 1 838 IPR024171 GO:0004674
Phco4g02522 838 CDD STKc_IRAK 527 791 - -
Phco4g02522 838 ProSiteProfiles Protein kinase domain profile. 521 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02522 838 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 488 596 - -
Phco4g02522 838 SMART ntp_6 345 419 IPR003609 -
Phco4g02522 838 Pfam S-locus glycoprotein domain 213 314 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02522 Phco-Chr4 46425579 46428946 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g02522 PK_Tyr_Ser-Thr 8.4e-50 CL0016