Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02518 ATGTTCAATCACATAAAGAAAAGACAATTGTCTTGTCCAGGAAAATCCAAATCCTGCTATTTAGGAATATGGTTCAACAACGTGCAAGAACAAACTGCTGTTTGGGTTGCAAACAGAAACACTCCCATTAACGACACCTCTGGGGTTCTCTCAATCAATCCAGATGGAAACCTAGTCCTCCACCACAACTATAGCACTAGTCCCATTTGGTCTACCAGTTTTCCACTCACCCGATCAAATAGCACTAACGTCATAGCTCAACTCTCAAACCTAGCAAACCTTGTTCTGATTCTTAACAGCACCAAAACTGTCATCTGGCAAAGCTTTGATCATGCCACAAACACCTTGATTCCATATCTAAGAATTGGTTTTGACAGAAGAGATAACCAGAGTTGGATCCTCCAATCTTGGAAGATAGATGATGACCCCGGAACAGGTTCTTACACATTGGAACTGAGCAGCAGTGGGAAGCCACAGTTGTTCTTGTATCACCAGAACCTTCCCTTGTGGCGAGGAGGATCGTGGAACGATGTCAACCACGTAGCACTCTCATTTAACCCGCTTCATAAGTCCTTGATCACTTGGGTGGTAATTCAGCAATCAGGTTTCTTTAATGTATTCACTTGGAATAACCAAAAGAATCAGTGGAACAGGTACTGGTCTGTGCCAATAAACCAATGTGATAACTATGGAACCTGTGGATCCAACGTTCTTGATGTAAGAAATGGTGGAAGTGGGTGCTTGGCATGGCATGGAAATTTGATAGATATACAAAAACTGAGTGATCAAGGCCAAGATTTATTTGTTCGTGTTGATGCAGTTGAACTAGCAAATTATAACAAAAAAACAAAAGGATTGCGCGGTAAAAAGAGAATAGCTACAATTCTGATTGCTTCAGCAGTAGCAAGTATCATTACTCTGGAAGAAAAAAAGCAAAGCCTTAAAGTGATAACGGAAGCCACAAGAAATTTTGGTGATGAGAATATGCTTGGGCAAGGTGGATTTGGTTCTGTCTATAAGGGCTGCCTAGCCAATGGACAAGAGATAGCAGTGAAAAGATTGTCCGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAACTGAAGTTAGATTATTAGTTAAACTTCAACACAGAAATCTGGTGAGGTTGCTCGGTTGTTGCTTTGAAAAGGAAGAAAGGATGTTAGTTTATGAATACCTACCAAATAAAAGCTTGGACTTCTTCATATTCGATGAAAAGCGAAGGTCATCACTGACTTGGGATAAGCGCTTTGAAATAATTTTGGGGATTGCTCGAGGCAGAAGTACGGCCTTTGTTGGGTGTGCATTCAGCAGCCTCCACGACGATCCAAAGACAAGTTTCACAAAAGGAATGACTGTTCCCAAGTATACTAGTCCTCAATCCAAGTGA 1410 0.4121 MFNHIKKRQLSCPGKSKSCYLGIWFNNVQEQTAVWVANRNTPINDTSGVLSINPDGNLVLHHNYSTSPIWSTSFPLTRSNSTNVIAQLSNLANLVLILNSTKTVIWQSFDHATNTLIPYLRIGFDRRDNQSWILQSWKIDDDPGTGSYTLELSSSGKPQLFLYHQNLPLWRGGSWNDVNHVALSFNPLHKSLITWVVIQQSGFFNVFTWNNQKNQWNRYWSVPINQCDNYGTCGSNVLDVRNGGSGCLAWHGNLIDIQKLSDQGQDLFVRVDAVELANYNKKTKGLRGKKRIATILIASAVASIITLEEKKQSLKVITEATRNFGDENMLGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKTEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDEKRRSSLTWDKRFEIILGIARGRSTAFVGCAFSSLHDDPKTSFTKGMTVPKYTSPQSK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02518 469 Gene3D Transferase(Phosphotransferase) domain 1 303 435 - -
Phco4g02518 469 Gene3D - 12 110 IPR036426 -
Phco4g02518 469 SUPERFAMILY alpha-D-mannose-specific plant lectins 19 176 IPR036426 -
Phco4g02518 469 SMART blect_4 2 112 IPR001480 -
Phco4g02518 469 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 293 399 - -
Phco4g02518 469 ProSiteProfiles Protein kinase domain profile. 324 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02518 469 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Phco4g02518 469 ProSiteProfiles Bulb-type lectin domain profile. 1 109 IPR001480 -
Phco4g02518 469 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 238 436 - -
Phco4g02518 469 Pfam Protein tyrosine and serine/threonine kinase 328 433 IPR001245 GO:0004672|GO:0006468
Phco4g02518 469 Pfam D-mannose binding lectin 32 138 IPR001480 -
Phco4g02518 469 CDD B_lectin 13 111 IPR001480 -
Phco4g02518 469 SUPERFAMILY Protein kinase-like (PK-like) 309 433 IPR011009 -
Phco4g02518 469 Pfam S-locus glycoprotein domain 179 243 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02518 Phco-Chr4 46388493 46393994 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g02518 PK_Tyr_Ser-Thr 2.1e-18 CL0016