Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02517 ATGAGTCAATACAACAAGCATAGCATCTTCCTGCTCTGCGCTAAGATTCTACTATTCACCTTCTCTTTTTGCTCTTCTTCTGATACCCTATTTGCTGACAAAGGTATCAGAGATGGAGAGCTTCTTGTTTCAAAAGCCCAGACATTTGCTCTTGGATTCTTCAGTCCAGGCAAGTCCAACTTCCGCTATGTGGGAATATGGTACAACAACGTCCAAGAACAAACTGTTGCTTGGGTGGCAAACAGAAACACTCCCATCAATGACACTTCTGGGTTTCTTTCAATCAACCCAGATGGAAACCTAGTACTCCAACACAAATATAGCACCATTCCCATTTGGTCTACCAATATTTCAACTTCCCAATCAAACAGCACCAAAGTCATGGCTAAACTCACAGATGTAGGTAACCTTGTTTTGATTCTTGAGAACACCGAAGCTTTCATCTGGCAAAGCTTTGACCATCCCACAGATACCTTGCTTCAAGATCTAAGACTTGGTTTTAACAGAAGAACAAACCAGAGTTGGTTCCTCCAATCTTGGAAGACAGATGATGACCCCGGAACAGGTTCTTACACATTGAAAATAAGCAGCATTGGGAAACCACAGCTGTTCTTTTATCACCTGAACCTTCCCTTTTGGCGAGGCGGATCGTGGAACGGTGAATTATTTATGGGTATACCCGACATGAAGAGAGAAATCTTTACTTTTAACGTTTCTTTTATAGAAGATGACAGCCAGGTAGTACTCTCATATAACATGGTTGATAAGTCCTTGGTCTCTCGGGTAGTAGTACAACCGTCAGGTTTCTTTCAAGTATTCACTTGGGATAACGAAAAGAGTCAATGGAATAGGTACTGGTCTGAACCAACAAATCAATGTGATAACTATGGAACCTGTGGATCAAACAGTAATTGTGACCCTTTGAACTTTGAGGAATTTCGGTGTACTTGTCTACCTGGGTTTGAACCCAAATCCCCACATGATTGGTATGATAACAGAGATGGGTCAGGAGGGTGCGTGAGGAAGCAAGGTGCATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAACTTGAAGGCTTGAAGCTTCCTGATACCTCCGAGGCAACTGCCAAAGAGGGTTGGAGTTTGGAAAAGTGTGGGGAGGATTGTTTGAGAAACTGCTCTTGCAGTGCATATGCAGTTCTTGATGTAAGAAATGGTGGAAGTGGGTGCTTGGCATGGCATGGAAGTTTGATAGACATACAAAAACTGAGTGATCAAGGCCAAGATTTATTTGTCCGTGTTGATGCAGTTGAACTAGCAAATTATAACAAAGAAACAAAAGGTGTAAGCGGTAAAAAGAGGATGGCTGCAATTCTGATTGCTTCAGTACTAGCAAGTCTCATTCTTTTCTCCTGTGTATATTACCTGTGGAAGAGAAAAAGCAAAGATAAAATGATGCAATATTTAAACCAATTTGCCCCTGAAGACGACCACGATATCCAAAGCAACACACATTCAAATCTTCCCTTTTTCAGCCTTAAAGTGATTACAGAAGCAACAAGAAATTTTGGTGATGAGAATATGCTTGGGGAAGGTGGATTCGGTTCTGTCTATAAGGGCTGCCTAGCCAATGGACAAGAGATAGCAGTGAAAAGATTGTCCGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAACTGAAGTTAGATTATTAGTTAAACTTCAACACAGAAATCTGGTGAGGTTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGTTAGTTTATGAATACCTACCAAATAAAAGCTTGGACTTCTTCATATTCGATGAAAAGCGAAGGTCATCACTGACTTGGGATAAGCGCTTTGAAATAATTTTGGGGATTGCTCGAGGTGTGTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCATAGAGATCTAAAAGCCAGCAATGTGCTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAAGACGAGAAGAGTGGTTGGAACATATGGATATATGTCACCAGAATATGCAATGCATGGACGATATTCAACAAAATCTGATGTCTTTAGTTTTGGGGTCTTACTTTTAGAGATTATTGCTGGCAAGAGGAATACAGATTGTGAAAAGGGAAGACCCTCTCTAAATTTGATTGGACATGTGTGGATAGTTTGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTGCCTCAGTCTTACTCTCCAGCTCTTGTTCTGAGATGCATTCAAATTGGTCTATTGTGCGTGCAAGAAAATTCAGCAAATAGACCTTCCTTGTCAGAAGTTGTTTTCATGCTAGGCAATGAAACACCTCTTTCCCCACCCGAAAAGCCAGCATTTTTATTCAATGGAGACAAAGATTGGCCTGAGCCATCAACATCAGGGGGAGGATCTTCGATATACGAAGTAACAGCCACTACCATCATCGCCCGCTAG 2502 0.4117 MSQYNKHSIFLLCAKILLFTFSFCSSSDTLFADKGIRDGELLVSKAQTFALGFFSPGKSNFRYVGIWYNNVQEQTVAWVANRNTPINDTSGFLSINPDGNLVLQHKYSTIPIWSTNISTSQSNSTKVMAKLTDVGNLVLILENTEAFIWQSFDHPTDTLLQDLRLGFNRRTNQSWFLQSWKTDDDPGTGSYTLKISSIGKPQLFFYHLNLPFWRGGSWNGELFMGIPDMKREIFTFNVSFIEDDSQVVLSYNMVDKSLVSRVVVQPSGFFQVFTWDNEKSQWNRYWSEPTNQCDNYGTCGSNSNCDPLNFEEFRCTCLPGFEPKSPHDWYDNRDGSGGCVRKQGASVCGNGEGFVKLEGLKLPDTSEATAKEGWSLEKCGEDCLRNCSCSAYAVLDVRNGGSGCLAWHGSLIDIQKLSDQGQDLFVRVDAVELANYNKETKGVSGKKRMAAILIASVLASLILFSCVYYLWKRKSKDKMMQYLNQFAPEDDHDIQSNTHSNLPFFSLKVITEATRNFGDENMLGEGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKTEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDEKRRSSLTWDKRFEIILGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQAKTRRVVGTYGYMSPEYAMHGRYSTKSDVFSFGVLLLEIIAGKRNTDCEKGRPSLNLIGHVWIVWTEGRALDIVDSTLPQSYSPALVLRCIQIGLLCVQENSANRPSLSEVVFMLGNETPLSPPEKPAFLFNGDKDWPEPSTSGGGSSIYEVTATTIIAR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02517 833 SMART serkin_6 517 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g02517 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 152 - -
Phco4g02517 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 481 592 - -
Phco4g02517 833 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Phco4g02517 833 CDD PAN_AP_plant 349 428 - -
Phco4g02517 833 Gene3D - 23 153 IPR036426 -
Phco4g02517 833 ProSiteProfiles EGF-like domain profile. 289 327 IPR000742 -
Phco4g02517 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Phco4g02517 833 SMART ntp_6 349 428 IPR003609 -
Phco4g02517 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Phco4g02517 833 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Phco4g02517 833 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Phco4g02517 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 186 IPR036426 -
Phco4g02517 833 Gene3D Hepatocyte Growth Factor 346 426 - -
Phco4g02517 833 SUPERFAMILY Protein kinase-like (PK-like) 498 804 IPR011009 -
Phco4g02517 833 CDD EGF_CA 291 325 - -
Phco4g02517 833 CDD B_lectin 36 155 IPR001480 -
Phco4g02517 833 Pfam S-locus glycoprotein domain 213 325 IPR000858 GO:0048544
Phco4g02517 833 Pfam PAN-like domain 348 414 IPR003609 -
Phco4g02517 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Phco4g02517 833 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672|GO:0006468
Phco4g02517 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 780 - -
Phco4g02517 833 CDD STKc_IRAK 523 788 - -
Phco4g02517 833 Pfam D-mannose binding lectin 75 181 IPR001480 -
Phco4g02517 833 Gene3D Phosphorylase Kinase; domain 1 491 592 - -
Phco4g02517 833 ProSiteProfiles PAN/Apple domain profile. 348 429 IPR003609 -
Phco4g02517 833 SMART blect_4 33 155 IPR001480 -
Phco4g02517 833 ProSiteProfiles Protein kinase domain profile. 517 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02517 Phco-Chr4 46384155 46388305 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g02517 PK_Tyr_Ser-Thr 4.2e-48 CL0016